Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GXN37_RS22130 Genome accession   NZ_CP132279
Coordinates   4581695..4582219 (-) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter youngae strain UL-CPE-01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4576695..4587219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GXN37_RS22120 - 4578538..4578819 (+) 282 WP_048213921.1 YjcB family protein -
  GXN37_RS22125 - 4578903..4581212 (-) 2310 WP_172743329.1 autotransporter outer membrane beta-barrel domain-containing protein -
  GXN37_RS22130 ssb 4581695..4582219 (-) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene
  GXN37_RS22135 uvrA 4582471..4585293 (+) 2823 WP_061067023.1 excinuclease ABC subunit UvrA -
  GXN37_RS22140 - 4585371..4585727 (-) 357 WP_048213923.1 MmcQ/YjbR family DNA-binding protein -
  GXN37_RS22145 aphA 4585848..4586561 (-) 714 WP_048213924.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=867968 GXN37_RS22130 WP_003826621.1 4581695..4582219(-) (ssb) [Citrobacter youngae strain UL-CPE-01]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=867968 GXN37_RS22130 WP_003826621.1 4581695..4582219(-) (ssb) [Citrobacter youngae strain UL-CPE-01]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTTGTGCTGTTCGGCAAACTGGCGGAAGTCGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTATATT
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAATCCGGCGTAGAAAAATACACCACTGAAGTCGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGTGGTCGTCAGGGCGGCGGCGCGCCGGCAGGTGGTGGTCAGCAGCAAGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCACAGTCTCGTCCGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGACTTCGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0T4S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5