Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | Q9Q93_RS02030 | Genome accession | NZ_CP132232 |
| Coordinates | 427014..427550 (+) | Length | 178 a.a. |
| NCBI ID | WP_306166193.1 | Uniprot ID | - |
| Organism | Enterobacter hormaechei strain RSY19 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 414944..484132 | 427014..427550 | within | 0 |
Gene organization within MGE regions
Location: 414944..484132
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q9Q93_RS01965 (Q9Q93_01965) | - | 415055..415927 (+) | 873 | WP_306166175.1 | ParA family protein | - |
| Q9Q93_RS01970 (Q9Q93_01970) | - | 415924..416307 (+) | 384 | WP_306166177.1 | hypothetical protein | - |
| Q9Q93_RS01975 (Q9Q93_01975) | dnaB-PI | 416300..417670 (+) | 1371 | WP_306166179.1 | SPI-7-type island replicative DNA helicase | - |
| Q9Q93_RS01980 (Q9Q93_01980) | - | 417667..419367 (+) | 1701 | WP_306166181.1 | ParB family protein | - |
| Q9Q93_RS01985 (Q9Q93_01985) | - | 419360..420070 (+) | 711 | WP_306166183.1 | DUF2786 domain-containing protein | - |
| Q9Q93_RS01990 (Q9Q93_01990) | - | 420077..420667 (+) | 591 | WP_006777722.1 | DUF2857 domain-containing protein | - |
| Q9Q93_RS01995 (Q9Q93_01995) | - | 420664..420912 (+) | 249 | WP_306166185.1 | hypothetical protein | - |
| Q9Q93_RS02000 (Q9Q93_02000) | - | 421012..422250 (+) | 1239 | WP_306166187.1 | STY4528 family pathogenicity island replication protein | - |
| Q9Q93_RS02005 (Q9Q93_02005) | - | 422263..422472 (-) | 210 | WP_306166189.1 | hypothetical protein | - |
| Q9Q93_RS02010 (Q9Q93_02010) | - | 422541..423266 (+) | 726 | WP_004115569.1 | PFL_4669 family integrating conjugative element protein | - |
| Q9Q93_RS02015 (Q9Q93_02015) | - | 423268..423822 (+) | 555 | WP_029593104.1 | hypothetical protein | - |
| Q9Q93_RS02020 (Q9Q93_02020) | - | 423838..425847 (+) | 2010 | WP_306166191.1 | DNA topoisomerase III | - |
| Q9Q93_RS02025 (Q9Q93_02025) | - | 426483..426953 (+) | 471 | WP_029593102.1 | STY4534 family ICE replication protein | - |
| Q9Q93_RS02030 (Q9Q93_02030) | ssb | 427014..427550 (+) | 537 | WP_306166193.1 | single-stranded DNA-binding protein | Machinery gene |
| Q9Q93_RS02035 (Q9Q93_02035) | - | 427615..427857 (+) | 243 | WP_004115560.1 | DUF4160 domain-containing protein | - |
| Q9Q93_RS02040 (Q9Q93_02040) | - | 427841..428089 (+) | 249 | WP_004115558.1 | DUF2442 domain-containing protein | - |
| Q9Q93_RS02045 (Q9Q93_02045) | - | 428226..428891 (+) | 666 | WP_306166195.1 | PilL N-terminal domain-containing protein | - |
| Q9Q93_RS02050 (Q9Q93_02050) | - | 428888..429646 (+) | 759 | WP_370350094.1 | hypothetical protein | - |
| Q9Q93_RS02055 (Q9Q93_02055) | - | 429658..430380 (+) | 723 | WP_088244032.1 | TIGR03759 family integrating conjugative element protein | - |
| Q9Q93_RS02060 (Q9Q93_02060) | - | 430359..430994 (+) | 636 | WP_031624646.1 | transglycosylase SLT domain-containing protein | - |
| Q9Q93_RS02065 (Q9Q93_02065) | - | 431000..431521 (+) | 522 | WP_306166197.1 | integrating conjugative element protein | - |
| Q9Q93_RS02070 (Q9Q93_02070) | - | 431521..432093 (+) | 573 | WP_306166199.1 | restriction endonuclease | - |
| Q9Q93_RS02075 (Q9Q93_02075) | - | 432104..432592 (+) | 489 | WP_306166201.1 | hypothetical protein | - |
| Q9Q93_RS02080 (Q9Q93_02080) | traD | 432585..434684 (+) | 2100 | WP_306166203.1 | type IV conjugative transfer system coupling protein TraD | - |
| Q9Q93_RS02085 (Q9Q93_02085) | - | 434677..435435 (+) | 759 | WP_006785966.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| Q9Q93_RS02090 (Q9Q93_02090) | - | 435526..435873 (-) | 348 | WP_016808262.1 | FxLYD domain-containing protein | - |
| Q9Q93_RS02095 (Q9Q93_02095) | - | 436058..436405 (+) | 348 | WP_137467528.1 | RAQPRD family integrative conjugative element protein | - |
| Q9Q93_RS02100 (Q9Q93_02100) | - | 436405..436647 (+) | 243 | WP_004115536.1 | TIGR03758 family integrating conjugative element protein | - |
| Q9Q93_RS02105 (Q9Q93_02105) | - | 436683..437069 (+) | 387 | WP_006785968.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| Q9Q93_RS02110 (Q9Q93_02110) | - | 437082..437438 (+) | 357 | WP_004115534.1 | TIGR03750 family conjugal transfer protein | - |
| Q9Q93_RS02115 (Q9Q93_02115) | - | 437435..438094 (+) | 660 | WP_004115533.1 | PFL_4703 family integrating conjugative element protein | - |
| Q9Q93_RS02120 (Q9Q93_02120) | - | 438094..439044 (+) | 951 | WP_306166206.1 | TIGR03749 family integrating conjugative element protein | - |
| Q9Q93_RS02125 (Q9Q93_02125) | - | 439034..440533 (+) | 1500 | WP_306166208.1 | TIGR03752 family integrating conjugative element protein | - |
| Q9Q93_RS02130 (Q9Q93_02130) | - | 440544..440912 (+) | 369 | WP_016151320.1 | hypothetical protein | - |
| Q9Q93_RS02135 (Q9Q93_02135) | - | 440912..441322 (+) | 411 | WP_006785978.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| Q9Q93_RS02140 (Q9Q93_02140) | - | 441322..444180 (+) | 2859 | WP_306166211.1 | conjugative transfer ATPase | - |
| Q9Q93_RS02145 (Q9Q93_02145) | - | 444177..444554 (+) | 378 | WP_119640205.1 | acetyltransferase | - |
| Q9Q93_RS02150 (Q9Q93_02150) | - | 444722..446515 (+) | 1794 | WP_306166214.1 | DUF262 domain-containing protein | - |
| Q9Q93_RS02155 (Q9Q93_02155) | - | 446828..447226 (+) | 399 | WP_306166217.1 | TIGR03757 family integrating conjugative element protein | - |
| Q9Q93_RS02160 (Q9Q93_02160) | - | 447223..448215 (+) | 993 | WP_306166218.1 | TIGR03756 family integrating conjugative element protein | - |
| Q9Q93_RS02165 (Q9Q93_02165) | - | 448215..449690 (+) | 1476 | WP_306166220.1 | integrating conjugative element protein | - |
| Q9Q93_RS02170 (Q9Q93_02170) | - | 449701..450039 (+) | 339 | WP_306166222.1 | hypothetical protein | - |
| Q9Q93_RS02175 (Q9Q93_02175) | - | 450042..451565 (+) | 1524 | WP_306166224.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| Q9Q93_RS02180 (Q9Q93_02180) | - | 451590..451991 (-) | 402 | WP_306166226.1 | hypothetical protein | - |
| Q9Q93_RS02185 (Q9Q93_02185) | umuD | 452272..452709 (+) | 438 | WP_306166855.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| Q9Q93_RS02190 (Q9Q93_02190) | umuC | 452712..453983 (+) | 1272 | WP_306166228.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| Q9Q93_RS02195 (Q9Q93_02195) | - | 454129..454677 (+) | 549 | WP_256767805.1 | hypothetical protein | - |
| Q9Q93_RS02200 (Q9Q93_02200) | - | 454740..455411 (-) | 672 | WP_306166230.1 | CPBP family intramembrane glutamic endopeptidase | - |
| Q9Q93_RS02205 (Q9Q93_02205) | - | 456384..457283 (+) | 900 | WP_306166232.1 | integrase domain-containing protein | - |
| Q9Q93_RS02210 (Q9Q93_02210) | - | 457293..457502 (-) | 210 | WP_306166234.1 | LysR family transcriptional regulator | - |
| Q9Q93_RS02215 (Q9Q93_02215) | - | 457770..458663 (-) | 894 | WP_306166236.1 | LysR family transcriptional regulator | - |
| Q9Q93_RS02220 (Q9Q93_02220) | - | 458766..459095 (+) | 330 | WP_036114537.1 | YciI family protein | - |
| Q9Q93_RS02225 (Q9Q93_02225) | - | 459247..459804 (-) | 558 | WP_080861672.1 | flavin reductase family protein | - |
| Q9Q93_RS02230 (Q9Q93_02230) | - | 459863..460720 (-) | 858 | WP_306166240.1 | SDR family oxidoreductase | - |
| Q9Q93_RS02235 (Q9Q93_02235) | - | 460756..461523 (-) | 768 | WP_306166241.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| Q9Q93_RS02240 (Q9Q93_02240) | - | 461558..462301 (-) | 744 | WP_306166243.1 | SDR family oxidoreductase | - |
| Q9Q93_RS02245 (Q9Q93_02245) | - | 462499..463443 (+) | 945 | WP_022065304.1 | AraC family transcriptional regulator | - |
| Q9Q93_RS02250 (Q9Q93_02250) | - | 463772..464146 (-) | 375 | WP_036114529.1 | hypothetical protein | - |
| Q9Q93_RS02255 (Q9Q93_02255) | - | 464258..464677 (+) | 420 | WP_075324497.1 | Rrf2 family transcriptional regulator | - |
| Q9Q93_RS02260 (Q9Q93_02260) | - | 464732..467923 (-) | 3192 | WP_306166246.1 | efflux RND transporter permease subunit | - |
| Q9Q93_RS02265 (Q9Q93_02265) | - | 467920..469089 (-) | 1170 | WP_306166248.1 | efflux RND transporter periplasmic adaptor subunit | - |
| Q9Q93_RS02270 (Q9Q93_02270) | - | 469829..470197 (+) | 369 | WP_181958952.1 | hypothetical protein | - |
| Q9Q93_RS02275 (Q9Q93_02275) | - | 470663..471028 (+) | 366 | WP_006781400.1 | hypothetical protein | - |
| Q9Q93_RS02280 (Q9Q93_02280) | - | 471114..471761 (+) | 648 | WP_306166251.1 | hypothetical protein | - |
| Q9Q93_RS02285 (Q9Q93_02285) | - | 471830..472303 (+) | 474 | WP_306166253.1 | DUF3085 domain-containing protein | - |
| Q9Q93_RS02290 (Q9Q93_02290) | - | 472499..472846 (+) | 348 | WP_200779329.1 | hypothetical protein | - |
| Q9Q93_RS02295 (Q9Q93_02295) | - | 472928..473914 (+) | 987 | WP_200779328.1 | ArdC family protein | - |
| Q9Q93_RS02300 (Q9Q93_02300) | - | 474020..474952 (+) | 933 | WP_306166256.1 | DUF1281 domain-containing protein | - |
| Q9Q93_RS02305 (Q9Q93_02305) | - | 475061..475384 (+) | 324 | Protein_444 | SAM-dependent DNA methyltransferase | - |
| Q9Q93_RS02310 (Q9Q93_02310) | - | 475504..476370 (-) | 867 | WP_306166258.1 | ImmA/IrrE family metallo-endopeptidase | - |
| Q9Q93_RS02315 (Q9Q93_02315) | - | 476373..476696 (-) | 324 | WP_001515173.1 | helix-turn-helix domain-containing protein | - |
| Q9Q93_RS02320 (Q9Q93_02320) | - | 476879..477844 (+) | 966 | WP_306166262.1 | CBASS oligonucleotide cyclase | - |
| Q9Q93_RS02325 (Q9Q93_02325) | cap7 | 477852..478370 (+) | 519 | WP_306166265.1 | CBASS phage resistance system CD-NTase-associated protein Cap7 | - |
| Q9Q93_RS02330 (Q9Q93_02330) | cap6 | 478367..479299 (+) | 933 | WP_306166267.1 | CBASS phage resistance system CD-NTase-associated protein Cap6 | - |
| Q9Q93_RS02335 (Q9Q93_02335) | nucC | 479390..480115 (+) | 726 | WP_075201405.1 | CBASS effector endonuclease NucC | - |
| Q9Q93_RS02340 (Q9Q93_02340) | - | 480108..480395 (-) | 288 | WP_306166269.1 | hypothetical protein | - |
| Q9Q93_RS02345 (Q9Q93_02345) | - | 480472..481110 (+) | 639 | Protein_452 | ATP-binding domain-containing protein | - |
| Q9Q93_RS02350 (Q9Q93_02350) | - | 481177..482796 (+) | 1620 | WP_306166272.1 | TraI domain-containing protein | - |
| Q9Q93_RS02355 (Q9Q93_02355) | - | 482857..483888 (+) | 1032 | WP_306166274.1 | site-specific integrase | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 19150.27 Da Isoelectric Point: 6.7295
>NTDB_id=867933 Q9Q93_RS02030 WP_306166193.1 427014..427550(+) (ssb) [Enterobacter hormaechei strain RSY19]
MSSRGVNKVILVGNLGQDPEVRYIPNGSAVATLSLATSESWRDKQSGEQKEVTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLRTRKWTDQAGQDKYTTEVVVNIGGTMQMLGGRQPGSGQNTSSRNDWGQPQQPSGPTHSGQASGSSAGAPPMDFDDD
IPFIGFGYGVPKSAIHAL
MSSRGVNKVILVGNLGQDPEVRYIPNGSAVATLSLATSESWRDKQSGEQKEVTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLRTRKWTDQAGQDKYTTEVVVNIGGTMQMLGGRQPGSGQNTSSRNDWGQPQQPSGPTHSGQASGSSAGAPPMDFDDD
IPFIGFGYGVPKSAIHAL
Nucleotide
Download Length: 537 bp
>NTDB_id=867933 Q9Q93_RS02030 WP_306166193.1 427014..427550(+) (ssb) [Enterobacter hormaechei strain RSY19]
ATGTCCTCACGCGGCGTTAACAAGGTTATTCTTGTCGGAAACCTCGGCCAGGATCCTGAAGTTCGTTATATTCCTAACGG
CAGCGCAGTTGCCACCCTTTCGCTGGCCACGTCTGAGAGCTGGCGCGATAAGCAGTCAGGTGAACAGAAAGAAGTGACCG
AATGGCATCGAGTGGTTATTTTCGGCAAGCTGGCAGAAATTGCGGGTGAATATCTGCGTAAAGGCTCCCAGGTTTACATC
GAGGGCCAGCTGCGCACACGCAAATGGACCGATCAGGCCGGCCAGGATAAATACACCACAGAGGTGGTGGTCAATATTGG
TGGCACCATGCAGATGCTTGGCGGTCGGCAGCCCGGCAGCGGTCAGAATACGTCTTCCCGGAATGACTGGGGCCAGCCTC
AGCAACCTTCCGGACCGACTCACAGTGGCCAGGCTTCCGGCAGCAGTGCCGGTGCACCACCGATGGACTTCGATGACGAT
ATACCGTTCATTGGATTCGGGTATGGAGTACCAAAATCGGCAATCCATGCACTCTGA
ATGTCCTCACGCGGCGTTAACAAGGTTATTCTTGTCGGAAACCTCGGCCAGGATCCTGAAGTTCGTTATATTCCTAACGG
CAGCGCAGTTGCCACCCTTTCGCTGGCCACGTCTGAGAGCTGGCGCGATAAGCAGTCAGGTGAACAGAAAGAAGTGACCG
AATGGCATCGAGTGGTTATTTTCGGCAAGCTGGCAGAAATTGCGGGTGAATATCTGCGTAAAGGCTCCCAGGTTTACATC
GAGGGCCAGCTGCGCACACGCAAATGGACCGATCAGGCCGGCCAGGATAAATACACCACAGAGGTGGTGGTCAATATTGG
TGGCACCATGCAGATGCTTGGCGGTCGGCAGCCCGGCAGCGGTCAGAATACGTCTTCCCGGAATGACTGGGGCCAGCCTC
AGCAACCTTCCGGACCGACTCACAGTGGCCAGGCTTCCGGCAGCAGTGCCGGTGCACCACCGATGGACTTCGATGACGAT
ATACCGTTCATTGGATTCGGGTATGGAGTACCAAAATCGGCAATCCATGCACTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
63.277 |
99.438 |
0.629 |
| ssb | Glaesserella parasuis strain SC1401 |
49.724 |
100 |
0.506 |
| ssb | Neisseria meningitidis MC58 |
44.068 |
99.438 |
0.438 |
| ssb | Neisseria gonorrhoeae MS11 |
43.75 |
98.876 |
0.433 |