Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   O5O45_RS29310 Genome accession   NZ_CP132203
Coordinates   6574309..6574938 (+) Length   209 a.a.
NCBI ID   WP_305902800.1    Uniprot ID   -
Organism   Hahella sp. HNIBRBA332     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6569309..6579938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O5O45_RS29295 (O5O45_29295) rplQ 6569432..6569821 (+) 390 WP_305902797.1 50S ribosomal protein L17 -
  O5O45_RS29300 (O5O45_29300) uvrA 6569942..6572767 (-) 2826 WP_305902798.1 excinuclease ABC subunit UvrA -
  O5O45_RS29305 (O5O45_29305) - 6572911..6574293 (+) 1383 WP_305902799.1 MFS transporter -
  O5O45_RS29310 (O5O45_29310) ssb 6574309..6574938 (+) 630 WP_305902800.1 single-stranded DNA-binding protein Machinery gene
  O5O45_RS29315 (O5O45_29315) - 6575048..6576043 (+) 996 WP_305902801.1 D-alanine--D-alanine ligase -
  O5O45_RS29320 (O5O45_29320) - 6576212..6576577 (+) 366 WP_216737720.1 hypothetical protein -
  O5O45_RS29325 (O5O45_29325) - 6576643..6577089 (-) 447 WP_305902802.1 hypothetical protein -
  O5O45_RS29330 (O5O45_29330) - 6577573..6578643 (+) 1071 WP_305902803.1 beta-galactosidase -
  O5O45_RS29335 (O5O45_29335) - 6578686..6579342 (-) 657 WP_305902804.1 hypothetical protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22564.71 Da        Isoelectric Point: 4.9740

>NTDB_id=867652 O5O45_RS29310 WP_305902800.1 6574309..6574938(+) (ssb) [Hahella sp. HNIBRBA332]
MARGVNKVILIGNLGSDPETRYTPSGSAISNLRLATDESYKDKQTGQLVPRTEWHRVVLFGKLAEIAAQYLKKGSKVYIE
GRLQTRKWQDQSGQDRYSTEIVVDMQGQMQMLDSRSGGGGMDNSQGYNDGWQQSAPSGDNYGGAPAAAPAGNYGGAPSNN
YGGAPNNNYGASSGGYSAPNQAQQRPQQPQQPKPPMPEPMDDFDDDIPF

Nucleotide


Download         Length: 630 bp        

>NTDB_id=867652 O5O45_RS29310 WP_305902800.1 6574309..6574938(+) (ssb) [Hahella sp. HNIBRBA332]
ATGGCGCGTGGTGTAAATAAAGTAATTCTAATTGGTAATTTGGGTAGCGATCCGGAAACACGTTATACCCCCTCCGGCAG
CGCGATTTCCAACCTGAGGTTGGCGACTGACGAGAGTTATAAAGACAAGCAGACGGGACAACTGGTGCCCCGTACGGAAT
GGCATCGGGTTGTGCTGTTCGGCAAGTTGGCGGAGATCGCCGCACAGTACTTGAAAAAAGGCTCCAAAGTATATATTGAA
GGTCGCCTGCAAACGCGCAAATGGCAGGACCAGTCTGGACAGGATCGTTACAGCACAGAAATTGTTGTAGACATGCAAGG
CCAGATGCAGATGCTCGACAGTCGCAGTGGCGGCGGTGGTATGGATAACTCGCAAGGTTACAACGACGGCTGGCAGCAAT
CCGCTCCTTCCGGCGATAACTATGGTGGCGCTCCAGCTGCTGCGCCTGCGGGTAATTATGGCGGCGCTCCTTCGAACAAT
TACGGCGGCGCCCCCAACAATAACTATGGCGCGTCCAGCGGCGGTTATTCCGCCCCGAATCAGGCGCAACAACGCCCGCA
ACAGCCTCAGCAACCAAAACCGCCCATGCCAGAGCCTATGGACGACTTTGACGACGATATTCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.675

100

0.517
  ssb Glaesserella parasuis strain SC1401

52.427

98.565

0.517
  ssb Neisseria meningitidis MC58

41.063

99.043

0.407
  ssb Neisseria gonorrhoeae MS11

41.463

98.086

0.407