Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   Q9G86_RS27195 Genome accession   NZ_CP132200
Coordinates   5376501..5377022 (-) Length   173 a.a.
NCBI ID   WP_305925966.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain L1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5371501..5382022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9G86_RS27175 (Q9G86_27175) rplI 5372711..5373157 (-) 447 WP_000864223.1 50S ribosomal protein L9 -
  Q9G86_RS27180 (Q9G86_27180) - 5373154..5375127 (-) 1974 WP_001113779.1 DHH family phosphoesterase -
  Q9G86_RS27185 (Q9G86_27185) - 5375206..5376141 (-) 936 WP_305925965.1 YybS family protein -
  Q9G86_RS27190 (Q9G86_27190) rpsR 5376222..5376455 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  Q9G86_RS27195 (Q9G86_27195) ssbA 5376501..5377022 (-) 522 WP_305925966.1 single-stranded DNA-binding protein Machinery gene
  Q9G86_RS27200 (Q9G86_27200) rpsF 5377049..5377339 (-) 291 WP_001233781.1 30S ribosomal protein S6 -
  Q9G86_RS27205 (Q9G86_27205) ychF 5377531..5378631 (-) 1101 WP_000524670.1 redox-regulated ATPase YchF -
  Q9G86_RS27210 (Q9G86_27210) - 5378747..5378905 (-) 159 WP_153577919.1 DUF951 domain-containing protein -
  Q9G86_RS27215 (Q9G86_27215) - 5378965..5379846 (-) 882 WP_000365115.1 mechanosensitive ion channel family protein -
  Q9G86_RS27220 (Q9G86_27220) yyaC 5380106..5380702 (+) 597 WP_001020709.1 spore protease YyaC -
  Q9G86_RS27225 (Q9G86_27225) spo0J 5380723..5381574 (-) 852 WP_078400658.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18807.61 Da        Isoelectric Point: 5.2461

>NTDB_id=867627 Q9G86_RS27195 WP_305925966.1 5376501..5377022(-) (ssbA) [Bacillus thuringiensis strain L1]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNSGNRGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=867627 Q9G86_RS27195 WP_305925966.1 5376501..5377022(-) (ssbA) [Bacillus thuringiensis strain L1]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGAAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGATGGACAAGACGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCGAGGTAATCAAGGGAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.159

100

0.734
  ssb Latilactobacillus sakei subsp. sakei 23K

56.742

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

36.813

100

0.387