Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Q9G97_RS11455 Genome accession   NZ_CP132194
Coordinates   2714464..2715519 (-) Length   351 a.a.
NCBI ID   WP_305898922.1    Uniprot ID   -
Organism   Psychrobacter sp. M13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2709464..2720519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9G97_RS11435 (Q9G97_11435) pilQ 2710060..2712495 (-) 2436 WP_305898919.1 type IV pilus secretin PilQ -
  Q9G97_RS11440 (Q9G97_11440) - 2712523..2713092 (-) 570 WP_305898920.1 pilus assembly protein PilP -
  Q9G97_RS11445 (Q9G97_11445) - 2713092..2713805 (-) 714 WP_305898921.1 type 4a pilus biogenesis protein PilO -
  Q9G97_RS11450 (Q9G97_11450) - 2713802..2714464 (-) 663 WP_201570207.1 PilN domain-containing protein -
  Q9G97_RS11455 (Q9G97_11455) comM 2714464..2715519 (-) 1056 WP_305898922.1 pilus assembly protein PilM Machinery gene
  Q9G97_RS11460 (Q9G97_11460) - 2715712..2718375 (+) 2664 WP_305898923.1 penicillin-binding protein 1A -
  Q9G97_RS11465 (Q9G97_11465) - 2718480..2719007 (-) 528 WP_201570210.1 DUF6586 family protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38505.89 Da        Isoelectric Point: 4.3981

>NTDB_id=867546 Q9G97_RS11455 WP_305898922.1 2714464..2715519(-) (comM) [Psychrobacter sp. M13]
MRLFSSKSRHLIGLDISSTSVKMVNIQRQQGLFHLKSYAVEALPVGAVVDKIIVDTEIVGESVARVVKRGQVAGSQAATS
VAGSAVITKIIDMDVALTDVEREAQIRLDADQYIPYPLEEVNLDFEVLGSSIVDDKLVQVLLAASRSENVDQRVDALAFG
GLETKIMDIESHAIERAFGLMVDSLPGIPELVALIDIGHNQTTLYIAKNGEFVYSREQLFGGMQLTEAIQNRYGLSFEEA
TINKREHTLPDDYYLEILTPFMENVIQQINRSLQFYFSSSQYNNVDHVVLAGGSSSIPGLYGMVQQRLGVPVSVANPFIN
MTIDPFIDSEQLAVDAPSLMAACGLSLRSFD

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=867546 Q9G97_RS11455 WP_305898922.1 2714464..2715519(-) (comM) [Psychrobacter sp. M13]
GTGAGGCTATTCTCTTCTAAGAGTCGACATCTAATAGGACTGGACATTAGTTCTACTTCTGTAAAGATGGTAAATATCCA
ACGTCAGCAAGGCCTTTTTCACCTGAAGTCTTATGCAGTAGAAGCATTACCTGTGGGCGCAGTCGTTGATAAAATAATTG
TTGATACTGAAATTGTAGGTGAGTCGGTTGCTAGAGTAGTCAAGCGTGGGCAAGTAGCAGGTAGTCAAGCAGCAACCTCT
GTTGCAGGCTCAGCAGTTATTACTAAGATTATTGATATGGATGTCGCGCTTACCGATGTTGAGCGTGAAGCACAAATACG
GCTAGATGCTGATCAGTATATTCCTTACCCCTTGGAAGAGGTGAATCTAGATTTTGAAGTGCTTGGTTCCTCAATAGTTG
ATGACAAATTAGTACAAGTGCTGCTTGCCGCCTCACGCTCAGAAAACGTTGATCAACGTGTTGATGCACTAGCTTTTGGT
GGTCTTGAAACCAAAATTATGGATATTGAGTCGCATGCCATAGAGCGGGCTTTTGGTCTCATGGTAGACAGCTTACCAGG
TATACCTGAATTGGTGGCTCTGATCGATATTGGCCATAATCAGACGACTTTATATATTGCCAAAAATGGCGAGTTTGTCT
ATAGCCGTGAGCAGTTATTTGGTGGTATGCAGCTGACGGAGGCTATTCAAAATCGCTACGGCTTATCGTTTGAAGAGGCA
ACTATTAATAAGCGTGAGCACACTTTACCAGATGATTATTACCTAGAGATTCTAACGCCATTTATGGAAAACGTTATCCA
ACAGATAAACCGTTCGCTACAGTTTTACTTCTCTTCTAGTCAATATAATAATGTAGATCACGTCGTGCTTGCAGGGGGTA
GTAGCTCTATTCCTGGGTTATATGGCATGGTACAACAAAGACTTGGTGTACCCGTGAGTGTTGCCAATCCTTTTATTAAT
ATGACCATAGATCCCTTTATAGACAGCGAGCAGCTGGCTGTTGATGCTCCAAGTTTGATGGCAGCATGTGGTCTGTCTTT
AAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

49.858

100

0.499
  pilM Acinetobacter baumannii D1279779

49.573

100

0.496
  comM Acinetobacter baylyi ADP1

46.439

100

0.464
  pilM Legionella pneumophila strain ERS1305867

40.793

100

0.41