Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | Q9L40_RS12985 | Genome accession | NZ_CP132190 |
| Coordinates | 1697346..1697936 (+) | Length | 196 a.a. |
| NCBI ID | WP_000157690.1 | Uniprot ID | A0A366AJW1 |
| Organism | Vibrio cholerae strain DRC187 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1692346..1702936
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q9L40_RS12970 (Q9L40_12970) | - | 1693143..1695620 (-) | 2478 | WP_029627686.1 | penicillin-binding protein 1A | - |
| Q9L40_RS12975 (Q9L40_12975) | pilM | 1695763..1696779 (+) | 1017 | WP_032480168.1 | type IV pilus assembly protein PilM | Machinery gene |
| Q9L40_RS12980 (Q9L40_12980) | pilN | 1696769..1697353 (+) | 585 | WP_029627684.1 | PilN domain-containing protein | Machinery gene |
| Q9L40_RS12985 (Q9L40_12985) | pilO | 1697346..1697936 (+) | 591 | WP_000157690.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| Q9L40_RS12990 (Q9L40_12990) | pilP | 1697926..1698444 (+) | 519 | WP_113611655.1 | pilus assembly protein PilP | Machinery gene |
| Q9L40_RS12995 (Q9L40_12995) | pilQ | 1698470..1700191 (+) | 1722 | WP_071179298.1 | type IV pilus secretin PilQ | Machinery gene |
| Q9L40_RS13000 (Q9L40_13000) | aroK | 1700378..1700902 (+) | 525 | WP_000818615.1 | shikimate kinase AroK | - |
| Q9L40_RS13005 (Q9L40_13005) | aroB | 1700930..1702015 (+) | 1086 | WP_305798962.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22877.27 Da Isoelectric Point: 4.4169
>NTDB_id=867518 Q9L40_RS12985 WP_000157690.1 1697346..1697936(+) (pilO) [Vibrio cholerae strain DRC187]
MASLQELELDEISEWPLLPQLVVILLIMLLIQGAGYWFYLMPKQDEIALLKQEEETVKATLRIKANKVAVLPQIQAQLDE
LKERYDFLLRQLPVQKELASMLASVNQLGLDSSLTFTRIDWGERESQEFLYRLPLNIELTGSYHDIGDFSQAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKQEVDDEK
MASLQELELDEISEWPLLPQLVVILLIMLLIQGAGYWFYLMPKQDEIALLKQEEETVKATLRIKANKVAVLPQIQAQLDE
LKERYDFLLRQLPVQKELASMLASVNQLGLDSSLTFTRIDWGERESQEFLYRLPLNIELTGSYHDIGDFSQAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKQEVDDEK
Nucleotide
Download Length: 591 bp
>NTDB_id=867518 Q9L40_RS12985 WP_000157690.1 1697346..1697936(+) (pilO) [Vibrio cholerae strain DRC187]
ATGGCTAGTTTGCAAGAGTTAGAATTGGATGAAATCAGTGAATGGCCGCTGCTGCCTCAGTTGGTGGTGATTCTGCTTAT
CATGCTACTGATCCAAGGTGCGGGTTATTGGTTCTATCTCATGCCCAAACAAGACGAGATTGCGCTGTTAAAGCAGGAAG
AGGAAACCGTCAAGGCCACACTGCGCATCAAAGCCAATAAAGTAGCGGTATTGCCGCAGATCCAAGCTCAGTTGGACGAG
CTCAAAGAGCGTTACGATTTTTTACTGCGCCAGCTACCGGTGCAAAAAGAGTTAGCCAGCATGCTGGCGTCAGTCAACCA
GCTTGGGCTCGATAGTTCGCTTACCTTTACACGGATTGATTGGGGGGAGCGTGAAAGCCAAGAGTTTCTTTACCGCTTAC
CGCTCAATATCGAACTGACGGGGAGCTATCACGATATTGGCGATTTTTCGCAAGCGATTGCCAAGCTACCGCGCATCATC
AACTTCGACGATGTAGATTGGCAGCGGGTAAGCCAAGAGAGTAGCACGCTGCACTTTCGAGTCAGAGCCTATACCTACCA
GTTTAAGCAGGAGGTGGATGATGAAAAATAA
ATGGCTAGTTTGCAAGAGTTAGAATTGGATGAAATCAGTGAATGGCCGCTGCTGCCTCAGTTGGTGGTGATTCTGCTTAT
CATGCTACTGATCCAAGGTGCGGGTTATTGGTTCTATCTCATGCCCAAACAAGACGAGATTGCGCTGTTAAAGCAGGAAG
AGGAAACCGTCAAGGCCACACTGCGCATCAAAGCCAATAAAGTAGCGGTATTGCCGCAGATCCAAGCTCAGTTGGACGAG
CTCAAAGAGCGTTACGATTTTTTACTGCGCCAGCTACCGGTGCAAAAAGAGTTAGCCAGCATGCTGGCGTCAGTCAACCA
GCTTGGGCTCGATAGTTCGCTTACCTTTACACGGATTGATTGGGGGGAGCGTGAAAGCCAAGAGTTTCTTTACCGCTTAC
CGCTCAATATCGAACTGACGGGGAGCTATCACGATATTGGCGATTTTTCGCAAGCGATTGCCAAGCTACCGCGCATCATC
AACTTCGACGATGTAGATTGGCAGCGGGTAAGCCAAGAGAGTAGCACGCTGCACTTTCGAGTCAGAGCCTATACCTACCA
GTTTAAGCAGGAGGTGGATGATGAAAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| pilO | Vibrio campbellii strain DS40M4 |
71.958 |
96.429 |
0.694 |