Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   Q9L40_RS12995 Genome accession   NZ_CP132190
Coordinates   1698470..1700191 (+) Length   573 a.a.
NCBI ID   WP_071179298.1    Uniprot ID   -
Organism   Vibrio cholerae strain DRC187     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1693470..1705191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L40_RS12975 (Q9L40_12975) pilM 1695763..1696779 (+) 1017 WP_032480168.1 type IV pilus assembly protein PilM Machinery gene
  Q9L40_RS12980 (Q9L40_12980) pilN 1696769..1697353 (+) 585 WP_029627684.1 PilN domain-containing protein Machinery gene
  Q9L40_RS12985 (Q9L40_12985) pilO 1697346..1697936 (+) 591 WP_000157690.1 type 4a pilus biogenesis protein PilO Machinery gene
  Q9L40_RS12990 (Q9L40_12990) pilP 1697926..1698444 (+) 519 WP_113611655.1 pilus assembly protein PilP Machinery gene
  Q9L40_RS12995 (Q9L40_12995) pilQ 1698470..1700191 (+) 1722 WP_071179298.1 type IV pilus secretin PilQ Machinery gene
  Q9L40_RS13000 (Q9L40_13000) aroK 1700378..1700902 (+) 525 WP_000818615.1 shikimate kinase AroK -
  Q9L40_RS13005 (Q9L40_13005) aroB 1700930..1702015 (+) 1086 WP_305798962.1 3-dehydroquinate synthase -
  Q9L40_RS13010 (Q9L40_13010) - 1702069..1703544 (+) 1476 WP_069648391.1 AAA family ATPase -
  Q9L40_RS13015 (Q9L40_13015) - 1703614..1704435 (+) 822 WP_252920732.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 62377.48 Da        Isoelectric Point: 4.6519

>NTDB_id=867520 Q9L40_RS12995 WP_071179298.1 1698470..1700191(+) (pilQ) [Vibrio cholerae strain DRC187]
MRNGLKTYVAQTWLTLWVGLALCASSTVFSAEFATTNQLENIDFRVNKEKAAVLIVELASPSAVVDVQKVQEGLSIELLK
TDVADDKLYLLDVKDFSTPVESVEVFRKAPSTQLVVTVDGEFQHDYTLKGKYLEVVISKLKADEKPKPKSVLEKEGKLIS
INFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILIAPKEELDLREKQAL
EKARLAEELGDLKSEIIKINFAKASDIAAMIGGEGNVNMLSERGAISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQ
VQIEARIVTVKEGNLDELGVRWGFSSSNGSFGAGGSIENNLLQTVPTTLPAADFNVQDFLNVNLAATSSNASSIAFQVAK
LGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLESSSSGASTVAFKKAVLSLKVTPQITPDNRLVL
DLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKS
ELLIFVTPKVVIQ

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=867520 Q9L40_RS12995 WP_071179298.1 1698470..1700191(+) (pilQ) [Vibrio cholerae strain DRC187]
ATGAGAAATGGATTGAAAACTTATGTCGCACAGACTTGGCTGACCTTATGGGTCGGTTTGGCACTTTGTGCTTCTTCCAC
GGTGTTTAGTGCTGAATTCGCTACTACCAACCAGTTGGAAAATATTGACTTTCGAGTCAACAAAGAGAAAGCGGCGGTCT
TAATTGTCGAATTGGCCTCGCCATCGGCGGTCGTGGATGTGCAAAAAGTCCAAGAAGGGTTGAGCATTGAGCTGCTTAAA
ACCGATGTGGCGGATGACAAGCTGTATCTGCTCGATGTGAAGGATTTTTCAACCCCTGTTGAGAGTGTGGAAGTATTCCG
TAAAGCGCCGAGCACACAACTTGTTGTGACTGTCGATGGTGAGTTTCAGCACGATTACACCTTGAAAGGAAAATACCTTG
AGGTCGTGATCAGTAAACTTAAAGCTGATGAAAAGCCTAAGCCAAAGAGTGTCTTGGAAAAAGAAGGCAAGCTTATCTCG
ATTAACTTCCAAGATATTCCTGTACGTAACGTATTGCAGTTGATTGCCGATTATAACGGTTTCAACTTAGTGGTTTCTGA
CTCGGTGGTGGGTAACCTGACTTTACGCTTGGATGGCGTGCCTTGGCAGCAAGTGTTGGACATTATTCTGCAAGTCAAAG
GGCTTGATAAGCGCGTCGATGGCAATGTGATTTTGATTGCGCCGAAAGAGGAACTCGATTTACGCGAGAAACAAGCGCTC
GAAAAAGCCCGTTTAGCGGAAGAACTCGGCGATTTAAAATCAGAAATTATCAAGATTAACTTTGCCAAAGCATCTGACAT
TGCGGCGATGATCGGCGGTGAAGGCAACGTCAACATGTTGTCTGAGCGAGGGGCGATCAGTATTGACGAACGGACTAACT
CACTGTTGATTCGAGAGCTACCCGATAACATCGCAGTGATCCGCGAGATCATCGAATCACTCGATATTCCAGTCAAACAA
GTGCAAATTGAGGCACGAATCGTCACAGTGAAAGAAGGTAACTTGGACGAACTAGGTGTGCGCTGGGGCTTCAGCTCGAG
CAATGGTTCATTTGGTGCTGGTGGCAGTATTGAAAACAACTTATTACAGACAGTTCCTACCACATTACCTGCTGCCGATT
TCAACGTTCAAGACTTCTTGAATGTCAACTTAGCAGCCACATCAAGCAATGCCTCTTCGATTGCATTCCAAGTGGCCAAA
TTAGGTTCTGGTACGTTGTTGGATTTGGAGCTTTCAGCATTACAAAATGAATCAAAGGCTGAAATCATCTCTAGCCCTCG
TTTGATCACTACGAATAAACAGCCTGCCTATATTGAGCAAGGTACCGAGATCCCTTACTTAGAATCGTCTTCCAGTGGTG
CCTCTACGGTCGCGTTTAAAAAAGCGGTATTGAGCTTGAAGGTTACGCCACAAATCACCCCAGATAACCGCTTGGTGCTG
GATTTAAGCGTGACCCAAGACCGACGGGGTGAAACGGTGAAAACGGGTACTGGAGAAGCGGTCTCCATCGATACTCAGCG
CATTGGTACTCAAGTACTGGTGAATAATGGAGAAACCGTGGTGCTGGGTGGCATTTTCCAACACAGCATCAATAATTCGG
TAGATAAGGTACCACTGTTGGGGGACTTGCCTGTTTTAGGTGCGTTATTCAGACGAACCTATGAACAAATGGGCAAAAGT
GAACTGCTAATTTTTGTCACGCCGAAAGTCGTCATTCAATAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(413-571)

Bacterial type II/III secretion system short domain (Secretin_N)

(255-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

94.939

100

0.949
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

94.939

100

0.949
  pilQ Vibrio campbellii strain DS40M4

75.475

100

0.763
  pilQ Legionella pneumophila strain ERS1305867

42.729

97.208

0.415
  pilQ Legionella pneumophila strain Lp02

42.729

97.208

0.415
  pilQ Acinetobacter baumannii strain A118

37.801

100

0.384
  pilQ Acinetobacter baumannii D1279779

37.801

100

0.384
  comQ Acinetobacter baylyi ADP1

39.286

97.731

0.384
  pilQ Pseudomonas aeruginosa PAK

38.768

96.335

0.373