Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   Q9L40_RS12980 Genome accession   NZ_CP132190
Coordinates   1696769..1697353 (+) Length   194 a.a.
NCBI ID   WP_029627684.1    Uniprot ID   -
Organism   Vibrio cholerae strain DRC187     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1691769..1702353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L40_RS12965 (Q9L40_12965) oxyR 1692124..1693017 (+) 894 WP_001025911.1 DNA-binding transcriptional regulator OxyR -
  Q9L40_RS12970 (Q9L40_12970) - 1693143..1695620 (-) 2478 WP_029627686.1 penicillin-binding protein 1A -
  Q9L40_RS12975 (Q9L40_12975) pilM 1695763..1696779 (+) 1017 WP_032480168.1 type IV pilus assembly protein PilM Machinery gene
  Q9L40_RS12980 (Q9L40_12980) pilN 1696769..1697353 (+) 585 WP_029627684.1 PilN domain-containing protein Machinery gene
  Q9L40_RS12985 (Q9L40_12985) pilO 1697346..1697936 (+) 591 WP_000157690.1 type 4a pilus biogenesis protein PilO Machinery gene
  Q9L40_RS12990 (Q9L40_12990) pilP 1697926..1698444 (+) 519 WP_113611655.1 pilus assembly protein PilP Machinery gene
  Q9L40_RS12995 (Q9L40_12995) pilQ 1698470..1700191 (+) 1722 WP_071179298.1 type IV pilus secretin PilQ Machinery gene
  Q9L40_RS13000 (Q9L40_13000) aroK 1700378..1700902 (+) 525 WP_000818615.1 shikimate kinase AroK -
  Q9L40_RS13005 (Q9L40_13005) aroB 1700930..1702015 (+) 1086 WP_305798962.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22069.51 Da        Isoelectric Point: 9.6910

>NTDB_id=867517 Q9L40_RS12980 WP_029627684.1 1696769..1697353(+) (pilN) [Vibrio cholerae strain DRC187]
MLHKVNLLPWRDARREAHKKRFLGLVTLGVLLAVLMQFAAGEYLGGQMALQQERIGYLQQHIFALDQQIAKLKIAEEEHK
ALLTRLTVVEQLQQKRNKTTEFMNQMPNLIPEGVYVDKIKMNGHQIEITGISDSTARLATMLDNLEKSDKLTEVEMHEIV
SGNKRFGKQFQSFKVSFKVLNPTSNSQDGEAHNG

Nucleotide


Download         Length: 585 bp        

>NTDB_id=867517 Q9L40_RS12980 WP_029627684.1 1696769..1697353(+) (pilN) [Vibrio cholerae strain DRC187]
ATGTTGCATAAGGTTAACTTACTGCCGTGGCGTGATGCGCGGCGTGAAGCACATAAAAAGCGTTTTTTAGGGCTAGTGAC
ACTCGGTGTTTTGCTGGCAGTGTTGATGCAATTTGCCGCAGGCGAATACTTGGGCGGACAAATGGCTTTGCAGCAAGAGC
GCATTGGTTATTTGCAACAACATATCTTCGCGCTGGATCAGCAGATCGCTAAGTTGAAGATCGCTGAAGAAGAACATAAG
GCGTTATTGACCCGCTTGACTGTGGTGGAGCAACTGCAGCAAAAGCGCAATAAAACCACTGAGTTTATGAACCAAATGCC
AAACCTGATCCCTGAAGGCGTCTATGTCGACAAGATCAAGATGAATGGCCATCAAATAGAAATAACCGGGATCAGCGATT
CCACTGCTCGCTTGGCAACCATGCTCGATAACTTGGAGAAGTCGGACAAATTAACCGAAGTTGAAATGCATGAAATCGTT
TCAGGAAATAAGCGATTTGGTAAGCAATTTCAGAGTTTTAAAGTCTCCTTTAAAGTTTTAAACCCAACCTCTAACTCACA
AGATGGGGAGGCACATAATGGCTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(102-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio cholerae strain A1552

94.845

100

0.948
  pilN Vibrio campbellii strain DS40M4

59.322

91.237

0.541