Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q8X47_RS20440 Genome accession   NZ_CP132061
Coordinates   4220044..4220580 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain QML220614     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4215044..4225580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8X47_RS20420 soxR 4216772..4217236 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  Q8X47_RS20425 soxS 4217322..4217645 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  Q8X47_RS20430 pdeC 4217648..4219234 (-) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  Q8X47_RS20435 yjcB 4219664..4219945 (+) 282 WP_001295689.1 YjcB family protein -
  Q8X47_RS20440 ssb 4220044..4220580 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  Q8X47_RS20445 uvrA 4220835..4223657 (+) 2823 WP_000357744.1 excinuclease ABC subunit UvrA -
  Q8X47_RS20450 yjbR 4223692..4224048 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  Q8X47_RS20455 yjbQ 4224052..4224468 (-) 417 WP_086977351.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  Q8X47_RS20460 aphA 4224579..4225292 (-) 714 WP_001395166.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=867096 Q8X47_RS20440 WP_000168305.1 4220044..4220580(-) (ssb) [Escherichia coli strain QML220614]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=867096 Q8X47_RS20440 WP_000168305.1 4220044..4220580(-) (ssb) [Escherichia coli strain QML220614]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489