Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   Q8W18_RS11500 Genome accession   NZ_CP132058
Coordinates   2257276..2257569 (-) Length   97 a.a.
NCBI ID   WP_306010872.1    Uniprot ID   -
Organism   Bacillus pumilus strain F12-21     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2252276..2262569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8W18_RS11450 (Q8W18_11450) sinR 2252439..2252774 (+) 336 WP_012010555.1 transcriptional regulator SinR Regulator
  Q8W18_RS11455 (Q8W18_11455) tasA 2252842..2253642 (-) 801 WP_306010868.1 biofilm matrix protein TasA -
  Q8W18_RS11460 (Q8W18_11460) sipW 2253700..2254272 (-) 573 WP_169056999.1 signal peptidase I SipW -
  Q8W18_RS11465 (Q8W18_11465) tapA 2254324..2254851 (-) 528 WP_306010869.1 amyloid fiber anchoring/assembly protein TapA -
  Q8W18_RS11470 (Q8W18_11470) - 2255151..2255429 (+) 279 WP_234034921.1 DUF3889 domain-containing protein -
  Q8W18_RS11475 (Q8W18_11475) - 2255463..2255657 (-) 195 WP_044140973.1 YqzE family protein -
  Q8W18_RS11480 (Q8W18_11480) comGG 2255717..2256100 (-) 384 WP_306010870.1 competence type IV pilus minor pilin ComGG -
  Q8W18_RS11485 (Q8W18_11485) comGF 2256097..2256627 (-) 531 WP_306010871.1 competence type IV pilus minor pilin ComGF -
  Q8W18_RS11490 (Q8W18_11490) comGE 2256536..2256853 (-) 318 WP_267903499.1 competence type IV pilus minor pilin ComGE -
  Q8W18_RS11495 (Q8W18_11495) comGD 2256837..2257283 (-) 447 WP_169056995.1 competence type IV pilus minor pilin ComGD -
  Q8W18_RS11500 (Q8W18_11500) comGC 2257276..2257569 (-) 294 WP_306010872.1 competence type IV pilus major pilin ComGC Machinery gene
  Q8W18_RS11505 (Q8W18_11505) comGB 2257586..2258626 (-) 1041 WP_306010873.1 competence type IV pilus assembly protein ComGB -
  Q8W18_RS11510 (Q8W18_11510) comGA 2258607..2259677 (-) 1071 WP_257474620.1 competence type IV pilus ATPase ComGA Machinery gene
  Q8W18_RS11515 (Q8W18_11515) - 2259937..2260527 (-) 591 WP_306010874.1 hypothetical protein -
  Q8W18_RS11520 (Q8W18_11520) - 2260925..2261797 (-) 873 WP_169056990.1 STAS domain-containing protein -
  Q8W18_RS11530 (Q8W18_11530) - 2262021..2262401 (-) 381 WP_003217382.1 Spx/MgsR family RNA polymerase-binding regulatory protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10783.74 Da        Isoelectric Point: 7.3837

>NTDB_id=867053 Q8W18_RS11500 WP_306010872.1 2257276..2257569(-) (comGC) [Bacillus pumilus strain F12-21]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQTIQSKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKVIVIQNGHVKHE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=867053 Q8W18_RS11500 WP_306010872.1 2257276..2257569(-) (comGC) [Bacillus pumilus strain F12-21]
ATGAATGATAAAGGATTTACTCTGTTAGAAATGTTAATTGTCATGCTTGTGATTTCAATTCTTTTACTGATTACCATTCC
GAATATCACTCGACACCACCAAACGATTCAATCAAAGGGCTGTGAGGGGCTTAAATCAATGGTGAGCACTCAGGTGATGG
CATATGAATTAGAGCACGATGGCAAGACACCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAAGGATTAACG
TGTCCTAATGGAAAAGTCATTGTCATTCAAAATGGCCATGTGAAGCATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

68.041

100

0.68
  comGC Staphylococcus aureus MW2

42.391

94.845

0.402
  comGC Staphylococcus aureus N315

42.391

94.845

0.402