Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   Q8W18_RS11450 Genome accession   NZ_CP132058
Coordinates   2252439..2252774 (+) Length   111 a.a.
NCBI ID   WP_012010555.1    Uniprot ID   -
Organism   Bacillus pumilus strain F12-21     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2247439..2257774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8W18_RS11430 (Q8W18_11430) gcvT 2247917..2249014 (-) 1098 WP_306010866.1 glycine cleavage system aminomethyltransferase GcvT -
  Q8W18_RS11435 (Q8W18_11435) - 2249576..2251246 (+) 1671 WP_306010867.1 DEAD/DEAH box helicase -
  Q8W18_RS11440 (Q8W18_11440) - 2251261..2252058 (+) 798 WP_180310525.1 YqhG family protein -
  Q8W18_RS11445 (Q8W18_11445) - 2252241..2252405 (+) 165 WP_003217357.1 anti-repressor SinI family protein -
  Q8W18_RS11450 (Q8W18_11450) sinR 2252439..2252774 (+) 336 WP_012010555.1 transcriptional regulator SinR Regulator
  Q8W18_RS11455 (Q8W18_11455) tasA 2252842..2253642 (-) 801 WP_306010868.1 biofilm matrix protein TasA -
  Q8W18_RS11460 (Q8W18_11460) sipW 2253700..2254272 (-) 573 WP_169056999.1 signal peptidase I SipW -
  Q8W18_RS11465 (Q8W18_11465) tapA 2254324..2254851 (-) 528 WP_306010869.1 amyloid fiber anchoring/assembly protein TapA -
  Q8W18_RS11470 (Q8W18_11470) - 2255151..2255429 (+) 279 WP_234034921.1 DUF3889 domain-containing protein -
  Q8W18_RS11475 (Q8W18_11475) - 2255463..2255657 (-) 195 WP_044140973.1 YqzE family protein -
  Q8W18_RS11480 (Q8W18_11480) comGG 2255717..2256100 (-) 384 WP_306010870.1 competence type IV pilus minor pilin ComGG -
  Q8W18_RS11485 (Q8W18_11485) comGF 2256097..2256627 (-) 531 WP_306010871.1 competence type IV pilus minor pilin ComGF -
  Q8W18_RS11490 (Q8W18_11490) comGE 2256536..2256853 (-) 318 WP_267903499.1 competence type IV pilus minor pilin ComGE -
  Q8W18_RS11495 (Q8W18_11495) comGD 2256837..2257283 (-) 447 WP_169056995.1 competence type IV pilus minor pilin ComGD -
  Q8W18_RS11500 (Q8W18_11500) comGC 2257276..2257569 (-) 294 WP_306010872.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 13001.59 Da        Isoelectric Point: 5.2831

>NTDB_id=867052 Q8W18_RS11450 WP_012010555.1 2252439..2252774(+) (sinR) [Bacillus pumilus strain F12-21]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=867052 Q8W18_RS11450 WP_012010555.1 2252439..2252774(+) (sinR) [Bacillus pumilus strain F12-21]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGCTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946