Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K5621_RS17065 Genome accession   NZ_AP024618
Coordinates   3798354..3799061 (-) Length   235 a.a.
NCBI ID   WP_221049861.1    Uniprot ID   -
Organism   Shewanella carassii strain TUM17387     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3793354..3804061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5621_RS17055 (TUM17387_33340) fdxH 3793503..3794426 (-) 924 WP_039033520.1 formate dehydrogenase subunit beta -
  K5621_RS17060 (TUM17387_33350) fdnG 3794429..3797443 (-) 3015 WP_157929098.1 formate dehydrogenase-N subunit alpha -
  K5621_RS17065 (TUM17387_33360) ssb 3798354..3799061 (-) 708 WP_221049861.1 single-stranded DNA-binding protein Machinery gene
  K5621_RS17070 (TUM17387_33370) - 3799095..3800462 (-) 1368 WP_221049862.1 MFS transporter -
  K5621_RS17075 (TUM17387_33380) uvrA 3800681..3803503 (+) 2823 WP_221049863.1 excinuclease ABC subunit UvrA -
  K5621_RS17080 (TUM17387_33390) - 3803511..3803849 (+) 339 WP_157929097.1 hypothetical protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 25795.17 Da        Isoelectric Point: 5.9130

>NTDB_id=86687 K5621_RS17065 WP_221049861.1 3798354..3799061(-) (ssb) [Shewanella carassii strain TUM17387]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVMFGKLAEIAGEYLRKGSQVYLE
GKLQTRKWKDQSGQDKYTTEVVVDMGGTMQMLGGRNQNQGGMSQGGNQGGMNQGGMNQNQGGYGGGQAQSQYNAPQQSGG
YQPKPAQQPQQPQQQYNAPQQQSYGQPQNSGYAPKPQQPAPQQAAPQQRPAPQPQPQQQNYTPDLDDGWDDDIPF

Nucleotide


Download         Length: 708 bp        

>NTDB_id=86687 K5621_RS17065 WP_221049861.1 3798354..3799061(-) (ssb) [Shewanella carassii strain TUM17387]
ATGGCCAGTCGTGGTGTTAATAAGGTAATTCTGGTGGGCAATCTGGGGCAGGACCCAGAGGTGCGCTACATGCCAAACGG
CAACGCCGTAGCGAATATCACAGTGGCCACCAGTGAGTCATGGAAAGACCAGCAGGGCCAACAGCAAGAGCGTACCGAAT
GGCATCGGGTTGTCATGTTCGGCAAGCTGGCTGAAATTGCCGGTGAGTACCTGCGCAAAGGCTCGCAAGTGTATTTGGAA
GGCAAGCTGCAGACGCGCAAGTGGAAAGATCAGAGCGGTCAGGACAAGTACACCACTGAAGTGGTTGTCGATATGGGCGG
CACCATGCAGATGCTGGGTGGCCGTAACCAAAACCAAGGCGGTATGAGCCAAGGCGGCAATCAGGGCGGTATGAACCAAG
GTGGTATGAACCAAAACCAAGGTGGTTACGGCGGTGGTCAGGCACAGTCTCAGTACAATGCGCCGCAGCAGTCTGGTGGC
TATCAGCCCAAGCCTGCTCAACAACCGCAGCAGCCACAGCAGCAGTACAACGCTCCGCAGCAGCAAAGCTATGGTCAGCC
GCAGAATTCAGGTTATGCGCCTAAGCCACAGCAGCCAGCGCCACAACAGGCTGCTCCACAGCAGCGTCCGGCACCACAGC
CTCAACCACAACAGCAGAACTACACGCCGGATCTGGATGACGGCTGGGATGATGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.43

100

0.549
  ssb Glaesserella parasuis strain SC1401

46.552

98.723

0.46
  ssb Neisseria gonorrhoeae MS11

43.478

97.872

0.426
  ssb Neisseria meningitidis MC58

42.174

97.872

0.413

Multiple sequence alignment