Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AABJ59_RS05505 Genome accession   NZ_AP027512
Coordinates   1151793..1152308 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain LR-28     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1146793..1157308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ59_RS05465 (VEE31_10560) csrA 1147811..1147996 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  AABJ59_RS05490 (VEE31_10570) yqaB 1149023..1149589 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AABJ59_RS05495 (VEE31_10580) yqaA 1149586..1150014 (+) 429 WP_001287454.1 YqaA family protein -
  AABJ59_RS05500 (VEE31_10590) gshA 1150087..1151643 (+) 1557 WP_000611781.1 glutamate--cysteine ligase -
  AABJ59_RS05505 (VEE31_10600) luxS 1151793..1152308 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AABJ59_RS05510 (VEE31_10610) - 1152359..1153471 (-) 1113 WP_115438693.1 ATP-binding protein -
  AABJ59_RS05515 (VEE31_10620) - 1153468..1154175 (-) 708 WP_001097117.1 RNA ligase family protein -
  AABJ59_RS05520 (VEE31_10630) emrB 1154433..1155971 (-) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  AABJ59_RS05525 (VEE31_10640) emrA 1155988..1157160 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=86687 AABJ59_RS05505 WP_001130211.1 1151793..1152308(+) (luxS) [Escherichia coli strain LR-28]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=86687 AABJ59_RS05505 WP_001130211.1 1151793..1152308(+) (luxS) [Escherichia coli strain LR-28]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment