Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K5631_RS18090 Genome accession   NZ_AP024617
Coordinates   4057762..4058478 (+) Length   238 a.a.
NCBI ID   WP_101058425.1    Uniprot ID   -
Organism   Shewanella algae strain TUM17386     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4052762..4063478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5631_RS18075 (TUM17386_35610) - 4052958..4053308 (-) 351 WP_129979955.1 hypothetical protein -
  K5631_RS18080 (TUM17386_35620) uvrA 4053316..4056138 (-) 2823 WP_208162685.1 excinuclease ABC subunit UvrA -
  K5631_RS18085 (TUM17386_35630) - 4056360..4057727 (+) 1368 WP_156018659.1 MFS transporter -
  K5631_RS18090 (TUM17386_35640) ssb 4057762..4058478 (+) 717 WP_101058425.1 single-stranded DNA-binding protein Machinery gene
  K5631_RS18095 (TUM17386_35650) - 4058553..4059662 (-) 1110 WP_208162684.1 HisA/HisF-related TIM barrel protein -
  K5631_RS18100 (TUM17386_35660) - 4059788..4060702 (+) 915 WP_190533455.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26199.55 Da        Isoelectric Point: 5.9130

>NTDB_id=86665 K5631_RS18090 WP_101058425.1 4057762..4058478(+) (ssb) [Shewanella algae strain TUM17386]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVMFGKLAEIAGEYLRKGSQVYLE
GKLQTRKWKDQSGQDKYTTEVVVDMGGTMQMLGGRNQNQGGMSQGGNQGGMNQGGMNQNQGSYGGGQAQSQSQYNAPQQS
GGYQPKPAQQPQQPQQQYNAPQQQSYGQQQNSGYAPKPQQPAPQQQAAPQQRPAPQPQPQQQNYTPDLDDGWDDDIPF

Nucleotide


Download         Length: 717 bp        

>NTDB_id=86665 K5631_RS18090 WP_101058425.1 4057762..4058478(+) (ssb) [Shewanella algae strain TUM17386]
ATGGCCAGTCGTGGTGTTAATAAGGTAATTCTGGTGGGCAATCTGGGACAGGACCCAGAGGTGCGCTACATGCCAAACGG
CAACGCCGTAGCGAATATCACAGTGGCCACCAGTGAGTCATGGAAGGACCAACAGGGCCAACAGCAAGAGCGTACCGAGT
GGCACAGGGTTGTCATGTTCGGCAAGCTGGCTGAAATTGCCGGTGAGTACCTGCGCAAAGGCTCGCAAGTGTATCTGGAA
GGCAAGCTGCAGACCCGCAAGTGGAAAGATCAGAGCGGTCAGGACAAGTACACCACTGAAGTGGTTGTCGATATGGGCGG
TACCATGCAGATGCTGGGTGGCCGTAACCAAAACCAAGGCGGTATGAGCCAAGGCGGCAATCAGGGCGGTATGAACCAAG
GTGGTATGAACCAAAACCAAGGTAGTTACGGTGGTGGTCAGGCACAGTCTCAATCTCAATACAATGCGCCACAGCAGTCC
GGCGGCTATCAGCCCAAGCCTGCTCAGCAACCGCAGCAGCCACAGCAACAGTACAACGCGCCGCAGCAGCAAAGCTATGG
TCAGCAGCAGAACTCAGGTTATGCGCCTAAGCCACAGCAGCCAGCGCCGCAACAACAGGCAGCTCCGCAACAGCGGCCGG
CACCACAGCCTCAGCCACAACAGCAGAACTACACGCCGGATCTGGATGACGGCTGGGATGATGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.333

100

0.538
  ssb Glaesserella parasuis strain SC1401

46.809

98.739

0.462
  ssb Neisseria gonorrhoeae MS11

42.489

97.899

0.416
  ssb Neisseria meningitidis MC58

41.631

97.899

0.408

Multiple sequence alignment