Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K5627_RS18530 Genome accession   NZ_AP024616
Coordinates   4167331..4168056 (-) Length   241 a.a.
NCBI ID   WP_025010183.1    Uniprot ID   -
Organism   Shewanella algae strain TUM17384     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4162331..4173056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5627_RS18520 (TUM17384_36520) fdxH 4162505..4163428 (-) 924 WP_025887978.1 formate dehydrogenase subunit beta -
  K5627_RS18525 (TUM17384_36530) fdnG 4163431..4166445 (-) 3015 WP_093983768.1 formate dehydrogenase-N subunit alpha -
  K5627_RS18530 (TUM17384_36540) ssb 4167331..4168056 (-) 726 WP_025010183.1 single-stranded DNA-binding protein Machinery gene
  K5627_RS18535 (TUM17384_36550) - 4168091..4169458 (-) 1368 WP_025010184.1 MFS transporter -
  K5627_RS18540 (TUM17384_36560) uvrA 4169680..4172502 (+) 2823 WP_101058423.1 excinuclease ABC subunit UvrA -
  K5627_RS18545 (TUM17384_36570) - 4172510..4172860 (+) 351 WP_129586019.1 hypothetical protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26525.91 Da        Isoelectric Point: 5.9130

>NTDB_id=86639 K5627_RS18530 WP_025010183.1 4167331..4168056(-) (ssb) [Shewanella algae strain TUM17384]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVMFGKLAEIAGEYLRKGSQVYLE
GKLQTRKWKDQSGQDKYTTEVVVDMGGTMQMLGGRNQNQGGMSQGGNQGGMNQGGMNQSQGSYGGGQAQSQSQYNAPQQS
GGYQPKPAQQPQQPQQPQQQYNAPQQQSYGQQQNSGYAPKPQQPAPQQQAAPQQRPAPQPQPQQQNYTPDLDDGWDDDIP
F

Nucleotide


Download         Length: 726 bp        

>NTDB_id=86639 K5627_RS18530 WP_025010183.1 4167331..4168056(-) (ssb) [Shewanella algae strain TUM17384]
ATGGCCAGTCGTGGTGTTAATAAGGTAATTCTGGTGGGCAATCTGGGACAGGACCCAGAGGTGCGCTACATGCCAAACGG
CAACGCCGTAGCGAATATCACAGTGGCCACCAGTGAGTCATGGAAAGACCAGCAGGGCCAACAGCAAGAGCGTACCGAGT
GGCACAGGGTTGTCATGTTCGGCAAGCTGGCTGAAATTGCCGGTGAATATCTGCGCAAAGGCTCGCAAGTGTATCTGGAA
GGCAAGCTGCAGACCCGCAAGTGGAAAGATCAGAGCGGTCAGGACAAGTACACCACTGAAGTGGTTGTTGATATGGGCGG
TACCATGCAGATGCTGGGTGGCCGTAACCAAAACCAAGGCGGTATGAGCCAAGGCGGCAATCAGGGTGGTATGAACCAAG
GTGGTATGAACCAAAGCCAAGGTAGTTACGGTGGTGGTCAGGCACAGTCTCAATCTCAATACAATGCGCCACAGCAGTCC
GGCGGCTATCAGCCCAAGCCTGCTCAGCAACCACAACAGCCACAACAGCCACAACAGCAGTACAACGCGCCGCAGCAGCA
AAGCTATGGTCAGCAGCAGAACTCAGGTTATGCGCCCAAGCCACAGCAGCCCGCGCCGCAACAACAGGCTGCTCCGCAGC
AGCGTCCGGCACCACAGCCTCAGCCACAACAGCAGAACTACACGCCGGATCTGGATGACGGCTGGGATGATGATATCCCG
TTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.675

100

0.531
  ssb Glaesserella parasuis strain SC1401

45.798

98.755

0.452
  ssb Neisseria gonorrhoeae MS11

41.949

97.925

0.411
  ssb Neisseria meningitidis MC58

41.102

97.925

0.402

Multiple sequence alignment