Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   Q7W71_RS27000 Genome accession   NZ_CP131924
Coordinates   5284955..5285476 (-) Length   173 a.a.
NCBI ID   WP_000981963.1    Uniprot ID   -
Organism   Bacillus mycoides strain PAMC 29627     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5279955..5290476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7W71_RS26980 rplI 5281167..5281613 (-) 447 WP_002130186.1 50S ribosomal protein L9 -
  Q7W71_RS26985 - 5281610..5283583 (-) 1974 WP_002016460.1 DHH family phosphoesterase -
  Q7W71_RS26990 - 5283662..5284597 (-) 936 WP_002016461.1 YybS family protein -
  Q7W71_RS26995 rpsR 5284677..5284910 (-) 234 WP_000918874.1 30S ribosomal protein S18 -
  Q7W71_RS27000 ssbA 5284955..5285476 (-) 522 WP_000981963.1 single-stranded DNA-binding protein Machinery gene
  Q7W71_RS27005 rpsF 5285503..5285793 (-) 291 WP_001233782.1 30S ribosomal protein S6 -
  Q7W71_RS27010 ychF 5285985..5287085 (-) 1101 WP_002166369.1 redox-regulated ATPase YchF -
  Q7W71_RS27015 - 5287201..5287398 (-) 198 WP_000436054.1 DUF951 domain-containing protein -
  Q7W71_RS27020 - 5287419..5288276 (-) 858 WP_002016466.1 mechanosensitive ion channel family protein -
  Q7W71_RS27025 yyaC 5288537..5289133 (+) 597 WP_002089953.1 spore protease YyaC -
  Q7W71_RS27030 spo0J 5289154..5290005 (-) 852 WP_170935246.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18809.58 Da        Isoelectric Point: 4.9222

>NTDB_id=866248 Q7W71_RS27000 WP_000981963.1 5284955..5285476(-) (ssbA) [Bacillus mycoides strain PAMC 29627]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=866248 Q7W71_RS27000 WP_000981963.1 5284955..5285476(-) (ssbA) [Bacillus mycoides strain PAMC 29627]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAGCAAGCAGAAAACGTGGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGACGGACGTCTTCAAACTCGT
AATTACGATGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAGAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAATCAAGGTAACTCTGGATTTACGAAGAATGACGATCCATTTTCGAATGTT
GGTCAACCGATTGACATTTCGGACGACGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.751

100

0.734
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.382