Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K5632_RS18620 Genome accession   NZ_AP024615
Coordinates   4206639..4207364 (-) Length   241 a.a.
NCBI ID   WP_025010183.1    Uniprot ID   -
Organism   Shewanella algae strain TUM17383     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4201639..4212364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5632_RS18610 (TUM17383_36700) - 4204415..4205329 (-) 915 WP_190533455.1 LysR family transcriptional regulator -
  K5632_RS18615 (TUM17383_36710) - 4205455..4206564 (+) 1110 WP_208162684.1 HisA/HisF-related TIM barrel protein -
  K5632_RS18620 (TUM17383_36720) ssb 4206639..4207364 (-) 726 WP_025010183.1 single-stranded DNA-binding protein Machinery gene
  K5632_RS18625 (TUM17383_36730) - 4207399..4208766 (-) 1368 WP_025010184.1 MFS transporter -
  K5632_RS18630 (TUM17383_36740) uvrA 4208987..4211809 (+) 2823 WP_208123820.1 excinuclease ABC subunit UvrA -
  K5632_RS18635 (TUM17383_36750) - 4211817..4212167 (+) 351 WP_129979955.1 hypothetical protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26525.91 Da        Isoelectric Point: 5.9130

>NTDB_id=86615 K5632_RS18620 WP_025010183.1 4206639..4207364(-) (ssb) [Shewanella algae strain TUM17383]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVMFGKLAEIAGEYLRKGSQVYLE
GKLQTRKWKDQSGQDKYTTEVVVDMGGTMQMLGGRNQNQGGMSQGGNQGGMNQGGMNQSQGSYGGGQAQSQSQYNAPQQS
GGYQPKPAQQPQQPQQPQQQYNAPQQQSYGQQQNSGYAPKPQQPAPQQQAAPQQRPAPQPQPQQQNYTPDLDDGWDDDIP
F

Nucleotide


Download         Length: 726 bp        

>NTDB_id=86615 K5632_RS18620 WP_025010183.1 4206639..4207364(-) (ssb) [Shewanella algae strain TUM17383]
ATGGCCAGTCGTGGTGTTAATAAGGTAATTCTGGTGGGCAATCTGGGACAGGACCCAGAGGTGCGCTACATGCCAAACGG
CAACGCCGTAGCGAATATCACAGTGGCCACCAGTGAGTCATGGAAAGACCAGCAGGGCCAACAGCAAGAGCGTACCGAGT
GGCACAGGGTTGTCATGTTCGGCAAGCTGGCTGAAATTGCCGGTGAATATCTGCGCAAAGGCTCGCAAGTGTATCTGGAA
GGCAAGCTGCAGACCCGCAAGTGGAAAGATCAGAGCGGTCAGGACAAGTACACCACTGAAGTGGTTGTTGATATGGGCGG
TACCATGCAGATGCTGGGTGGCCGTAACCAAAACCAAGGCGGTATGAGCCAAGGCGGCAATCAGGGTGGTATGAACCAAG
GTGGTATGAACCAAAGCCAAGGTAGTTACGGTGGTGGTCAGGCACAGTCTCAATCTCAATACAATGCGCCACAGCAGTCC
GGCGGCTATCAGCCCAAGCCTGCTCAGCAACCACAACAGCCACAACAGCCACAACAGCAGTACAACGCGCCGCAGCAGCA
AAGCTATGGTCAGCAGCAGAACTCAGGTTATGCGCCCAAGCCACAGCAGCCCGCGCCGCAACAACAGGCTGCTCCGCAGC
AGCGTCCGGCACCACAGCCTCAGCCACAACAGCAGAACTACACGCCGGATCTGGATGACGGCTGGGATGATGATATCCCG
TTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.675

100

0.531
  ssb Glaesserella parasuis strain SC1401

45.798

98.755

0.452
  ssb Neisseria gonorrhoeae MS11

41.949

97.925

0.411
  ssb Neisseria meningitidis MC58

41.102

97.925

0.402

Multiple sequence alignment