Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   Q7W82_RS18585 Genome accession   NZ_CP131914
Coordinates   4324922..4325980 (-) Length   352 a.a.
NCBI ID   WP_343242790.1    Uniprot ID   -
Organism   Xanthomonas indica strain PPL560     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4319922..4330980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7W82_RS18565 (Q7W82_18540) - 4321008..4322915 (-) 1908 WP_242160577.1 type IV pilus secretin PilQ family protein -
  Q7W82_RS18570 (Q7W82_18545) - 4322936..4323472 (-) 537 WP_242160576.1 pilus assembly protein PilP -
  Q7W82_RS18575 (Q7W82_18550) - 4323469..4324134 (-) 666 WP_242160575.1 type 4a pilus biogenesis protein PilO -
  Q7W82_RS18580 (Q7W82_18555) - 4324131..4324922 (-) 792 WP_242160574.1 PilN domain-containing protein -
  Q7W82_RS18585 (Q7W82_18560) pilM 4324922..4325980 (-) 1059 WP_343242790.1 pilus assembly protein PilM Machinery gene
  Q7W82_RS18590 (Q7W82_18565) - 4326199..4328631 (+) 2433 WP_242160572.1 penicillin-binding protein 1A -
  Q7W82_RS18595 (Q7W82_18570) - 4328784..4329428 (+) 645 WP_010341535.1 hypothetical protein -
  Q7W82_RS18600 (Q7W82_18575) - 4329542..4330831 (-) 1290 WP_026143410.1 citrate synthase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37682.30 Da        Isoelectric Point: 4.4460

>NTDB_id=866131 Q7W82_RS18585 WP_343242790.1 4324922..4325980(-) (pilM) [Xanthomonas indica strain PPL560]
MGLIPKSQQPLIGIDISSTAVKLLQLSRNGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVTRSGTRAKHAAAA
VAGSAVITKVIPMPADLDESELEAQVELEAVNYIPYPIDEVNLDFEVLGVIPNNPEMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADGIVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGMAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAALAGLPEMVEEQLGVATVVANPLA
QMTLGPKVQAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=866131 Q7W82_RS18585 WP_343242790.1 4324922..4325980(-) (pilM) [Xanthomonas indica strain PPL560]
GTGGGGCTTATCCCAAAGAGTCAGCAACCGCTGATCGGCATCGATATCAGCTCGACCGCGGTCAAGCTGCTGCAGCTTTC
GCGTAACGGCAACCGGTTCCGCGTCGAGCATTACGCCGTGGAACCCTTGCCGCCCAATGCCGTGGTCGAAAAGAACATCG
TCGAGGTCGAGGCGGTGGGCGAGGCGATCCGCCGCGCCGTCACCCGTTCCGGCACCCGCGCCAAGCACGCCGCGGCCGCC
GTGGCCGGTTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGACCTGGACGAGAGCGAACTGGAAGCCCAGGTCGA
GCTGGAGGCGGTGAACTACATCCCGTACCCGATCGACGAAGTGAACCTGGATTTCGAGGTGCTGGGCGTCATCCCCAACA
ACCCCGAGATGGTGCAGGTGCTGCTGGCGGCCTCGCGCTCGGAGAACGTGGAACTGCGCCAGTCGGCCCTGGAACTGGGC
GGCCTGGTGGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTTCGCGCTGGTGGCCAGCGAGCTGCCGGT
GGCCGCCGACGGCATCGTCGCCCTGGTCGACATCGGTGCCACCATGACCACCCTCAACGTCCTGCGCGGCGGGCGCAGCC
TGTACAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTGACCGACGAAGTGATGCGCCGCTACGGCCTGACCTACGAGGAA
GCCGGCATGGCCAAGCGCCAGGGCGGGCTGCCGGAGAGCTACGAGGTCGAGGTGCTGGAACCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCCGGCAGCGAATTCAACCGGGTCGACCACATCGTCCTGGCCGGCG
GTTGCGCCGCCCTGGCCGGGCTGCCGGAGATGGTGGAGGAGCAACTGGGCGTGGCCACGGTGGTCGCCAACCCGTTGGCG
CAGATGACCTTGGGGCCGAAGGTCCAGGCGCATGCGCTGGCCCAGGATGCGCCGGCGCTGATGATCGCCACCGGCCTGGC
GCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.705

100

0.517
  comM Acinetobacter nosocomialis M2

51.42

100

0.514
  comM Acinetobacter baylyi ADP1

50

100

0.5
  pilM Legionella pneumophila strain ERS1305867

47.714

99.432

0.474