Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K5638_RS19310 Genome accession   NZ_AP024614
Coordinates   4313010..4313726 (-) Length   238 a.a.
NCBI ID   WP_208145525.1    Uniprot ID   -
Organism   Shewanella algae strain TUM17382     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4308010..4318726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5638_RS19300 (TUM17382_38060) - 4310786..4311700 (-) 915 WP_190533455.1 LysR family transcriptional regulator -
  K5638_RS19305 (TUM17382_38070) - 4311826..4312935 (+) 1110 WP_208162684.1 HisA/HisF-related TIM barrel protein -
  K5638_RS19310 (TUM17382_38080) ssb 4313010..4313726 (-) 717 WP_208145525.1 single-stranded DNA-binding protein Machinery gene
  K5638_RS19315 (TUM17382_38090) - 4313761..4315128 (-) 1368 WP_025010184.1 MFS transporter -
  K5638_RS19320 (TUM17382_38100) uvrA 4315349..4318171 (+) 2823 WP_208136200.1 excinuclease ABC subunit UvrA -
  K5638_RS19325 (TUM17382_38110) - 4318179..4318529 (+) 351 WP_145839147.1 hypothetical protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26141.52 Da        Isoelectric Point: 5.9130

>NTDB_id=86591 K5638_RS19310 WP_208145525.1 4313010..4313726(-) (ssb) [Shewanella algae strain TUM17382]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVMFGKLAEIAGEYLRKGSQVYLE
GKLQTRKWKDQSGQDKYTTEVVVDMGGTMQMLGGRNQNQGGMSQGGNQGGMNQGGMNQSQGSYGGGQAQSQSQYNAPQQS
GGYQPKPAQQPQQPQQQYNAPQQQSYGQPQNSGYAPKPQQPAPQQQAAPQQRPAPQPQPQQQNYTPDLDDGWDDDIPF

Nucleotide


Download         Length: 717 bp        

>NTDB_id=86591 K5638_RS19310 WP_208145525.1 4313010..4313726(-) (ssb) [Shewanella algae strain TUM17382]
ATGGCCAGTCGTGGTGTTAATAAGGTAATTCTGGTGGGCAATCTGGGACAGGACCCAGAGGTGCGCTACATGCCAAACGG
CAACGCCGTAGCGAATATCACAGTGGCCACCAGTGAGTCATGGAAAGACCAGCAGGGCCAACAGCAAGAGCGTACCGAAT
GGCATCGGGTTGTCATGTTCGGCAAGCTGGCTGAAATTGCCGGTGAGTACCTGCGCAAAGGCTCGCAAGTGTATTTGGAA
GGCAAGCTGCAGACCCGCAAGTGGAAAGATCAGAGCGGTCAGGACAAGTACACCACTGAAGTGGTTGTCGATATGGGCGG
CACCATGCAGATGCTGGGTGGCCGTAACCAAAATCAAGGTGGTATGAGCCAAGGCGGCAACCAGGGCGGTATGAACCAAG
GTGGTATGAACCAAAGCCAAGGTAGTTACGGTGGTGGTCAGGCACAGTCTCAATCTCAATACAATGCGCCACAGCAGTCC
GGCGGCTATCAGCCCAAGCCTGCTCAGCAACCGCAGCAGCCACAACAACAGTACAACGCGCCGCAGCAGCAAAGCTATGG
TCAGCCGCAGAACTCAGGTTATGCGCCCAAGCCACAGCAGCCAGCGCCGCAACAACAGGCTGCTCCGCAGCAGCGTCCGG
CACCACAGCCTCAGCCACAACAGCAGAACTACACGCCGGATCTGGATGACGGCTGGGATGATGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.333

100

0.538
  ssb Glaesserella parasuis strain SC1401

46.383

98.739

0.458
  ssb Neisseria gonorrhoeae MS11

42.489

97.899

0.416
  ssb Neisseria meningitidis MC58

41.631

97.899

0.408

Multiple sequence alignment