Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q7571_RS00980 Genome accession   NZ_CP131885
Coordinates   217386..217967 (+) Length   193 a.a.
NCBI ID   WP_001215080.1    Uniprot ID   A0A009T283
Organism   Acinetobacter baumannii strain 2008S11-069     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 217386..227780 217386..217967 within 0


Gene organization within MGE regions


Location: 217386..227780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7571_RS00980 (Q7571_00985) ssb 217386..217967 (+) 582 WP_001215080.1 single-stranded DNA-binding protein Machinery gene
  Q7571_RS00985 (Q7571_00990) - 218185..219357 (+) 1173 WP_342255292.1 site-specific integrase -
  Q7571_RS00990 (Q7571_00995) - 219362..220939 (+) 1578 WP_342255293.1 site-specific integrase -
  Q7571_RS00995 (Q7571_01000) - 220936..222933 (+) 1998 WP_342255294.1 integrase -
  Q7571_RS01000 (Q7571_01005) - 222926..223402 (+) 477 WP_138140437.1 protein kinase -
  Q7571_RS01005 (Q7571_01010) - 223771..224784 (+) 1014 WP_138140436.1 nucleoid-associated protein -
  Q7571_RS01010 (Q7571_01015) - 224777..225967 (+) 1191 WP_342255295.1 hypothetical protein -
  Q7571_RS01015 (Q7571_01020) - 226035..226349 (-) 315 WP_138140434.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  Q7571_RS01020 (Q7571_01025) - 226765..227088 (-) 324 WP_280010035.1 AzlD domain-containing protein -
  Q7571_RS01025 (Q7571_01030) - 227085..227780 (-) 696 WP_005119243.1 AzlC family ABC transporter permease -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20978.80 Da        Isoelectric Point: 6.4822

>NTDB_id=865743 Q7571_RS00980 WP_001215080.1 217386..217967(+) (ssb) [Acinetobacter baumannii strain 2008S11-069]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGGGYGQNNGGYGGQGGF
GNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=865743 Q7571_RS00980 WP_001215080.1 217386..217967(+) (ssb) [Acinetobacter baumannii strain 2008S11-069]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAGTTTTCTATCGCAACAAGTGAAGTTTGGACCGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTATATCGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGTCAAGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGCGAACAAGGTTTTGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCGCCTCAAC
AAGGTGGCGGCTATCAAAATAACAACCAAGGTGGTGGCTACGGCCAAAACAATGGTGGTTATGGTGGCCAAGGTGGTTTC
GGTAATGGTGGTAACAGCCCGCAAGGTGGTGGTTTTGCCCCTAAAGCACCTCAACAACCAGCGTCTGCACCAGCTGATTT
AGACGACGATTTACCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009T283

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.5

100

0.534
  ssb Vibrio cholerae strain A1552

43.564

100

0.456
  ssb Neisseria meningitidis MC58

38.579

100

0.394
  ssb Neisseria gonorrhoeae MS11

38.579

100

0.394