Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   Q7572_RS01865 Genome accession   NZ_CP131878
Coordinates   401788..402270 (+) Length   160 a.a.
NCBI ID   WP_004884685.1    Uniprot ID   A0A1V0YN91
Organism   Acinetobacter nosocomialis strain 2014S01-097     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 396788..407270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7572_RS01835 (Q7572_01845) fimU 397250..397723 (+) 474 WP_023188121.1 GspH/FimT family pseudopilin Machinery gene
  Q7572_RS01840 (Q7572_01850) pilV 397717..398277 (+) 561 WP_079377028.1 type IV pilus modification protein PilV Machinery gene
  Q7572_RS01845 (Q7572_01855) pilW 398277..399275 (+) 999 WP_004884688.1 PilW family protein Machinery gene
  Q7572_RS01850 (Q7572_01860) pilX 399272..400087 (+) 816 WP_004711686.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  Q7572_RS01855 - 400087..400272 (+) 186 Protein_357 hypothetical protein -
  Q7572_RS01860 (Q7572_01865) - 400624..401775 (+) 1152 Protein_358 hypothetical protein -
  Q7572_RS01865 (Q7572_01870) pilY2 401788..402270 (+) 483 WP_004884685.1 type IV pilin protein Machinery gene
  Q7572_RS01870 (Q7572_01875) pilE 402267..402692 (+) 426 WP_004884682.1 type IV pilin protein Machinery gene
  Q7572_RS01875 (Q7572_01880) rpsP 402839..403090 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  Q7572_RS01880 (Q7572_01885) rimM 403110..403658 (+) 549 WP_004711694.1 ribosome maturation factor RimM -
  Q7572_RS01885 (Q7572_01890) trmD 403705..404460 (+) 756 WP_004884678.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  Q7572_RS01890 (Q7572_01895) rplS 404676..405044 (+) 369 WP_002051668.1 50S ribosomal protein L19 -
  Q7572_RS01895 (Q7572_01900) - 405096..406037 (-) 942 WP_079377031.1 triacylglycerol lipase -
  Q7572_RS01900 (Q7572_01905) - 406152..407186 (-) 1035 WP_004884673.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17498.71 Da        Isoelectric Point: 9.1549

>NTDB_id=865710 Q7572_RS01865 WP_004884685.1 401788..402270(+) (pilY2) [Acinetobacter nosocomialis strain 2014S01-097]
MSKYYNLKFNRGFTLIELMVTLLTLAILVAIAVPSYQSYARRATASAAKSEILKLAERLEQHKSRNFTYRGFTTTSVTLT
RGGYTIQITDDTTAGNLLTSSAANGQTWVIRATTTDSRNLNFIAKNSGLRCQSLTATAVDNDCGGTTTCNTCEANSESWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=865710 Q7572_RS01865 WP_004884685.1 401788..402270(+) (pilY2) [Acinetobacter nosocomialis strain 2014S01-097]
ATGAGTAAATACTATAATTTGAAGTTCAATCGGGGTTTTACTCTGATTGAACTTATGGTCACTCTTCTTACTTTAGCTAT
TCTTGTTGCTATTGCTGTTCCTTCTTATCAAAGTTATGCCCGTAGAGCTACCGCATCTGCCGCTAAGAGTGAGATTTTAA
AATTAGCTGAGCGATTGGAGCAGCATAAGTCTAGAAATTTTACCTATAGGGGATTTACCACAACCTCTGTAACGTTAACT
CGTGGGGGGTATACGATTCAGATCACTGATGATACGACTGCTGGTAATTTATTAACGAGTTCTGCTGCTAATGGGCAGAC
ATGGGTGATTAGAGCGACTACTACAGATTCCAGAAATCTTAATTTTATTGCTAAAAACTCAGGTTTACGTTGCCAGAGCT
TAACAGCTACTGCTGTTGATAATGATTGTGGTGGAACAACTACATGTAACACATGTGAAGCAAATAGTGAGAGTTGGCAG
TGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0YN91

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

83.75

100

0.838
  comE Acinetobacter baylyi ADP1

37.209

100

0.4