Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   Q7572_RS01835 Genome accession   NZ_CP131878
Coordinates   397250..397723 (+) Length   157 a.a.
NCBI ID   WP_023188121.1    Uniprot ID   A0AA36K993
Organism   Acinetobacter nosocomialis strain 2014S01-097     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 392250..402723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7572_RS01810 (Q7572_01820) - 392712..394817 (-) 2106 WP_004884699.1 HD domain-containing protein -
  Q7572_RS01815 (Q7572_01825) - 394858..394989 (-) 132 WP_102990545.1 hypothetical protein -
  Q7572_RS01820 (Q7572_01830) rpoZ 395028..395306 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  Q7572_RS01825 (Q7572_01835) gmk 395379..396008 (-) 630 WP_002051739.1 guanylate kinase -
  Q7572_RS01830 (Q7572_01840) ispH 396131..397081 (+) 951 WP_002051768.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  Q7572_RS01835 (Q7572_01845) fimU 397250..397723 (+) 474 WP_023188121.1 GspH/FimT family pseudopilin Machinery gene
  Q7572_RS01840 (Q7572_01850) pilV 397717..398277 (+) 561 WP_079377028.1 type IV pilus modification protein PilV Machinery gene
  Q7572_RS01845 (Q7572_01855) pilW 398277..399275 (+) 999 WP_004884688.1 PilW family protein Machinery gene
  Q7572_RS01850 (Q7572_01860) pilX 399272..400087 (+) 816 WP_004711686.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  Q7572_RS01855 - 400087..400272 (+) 186 Protein_357 hypothetical protein -
  Q7572_RS01860 (Q7572_01865) - 400624..401775 (+) 1152 Protein_358 hypothetical protein -
  Q7572_RS01865 (Q7572_01870) pilY2 401788..402270 (+) 483 WP_004884685.1 type IV pilin protein Machinery gene
  Q7572_RS01870 (Q7572_01875) pilE 402267..402692 (+) 426 WP_004884682.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16855.49 Da        Isoelectric Point: 10.2580

>NTDB_id=865706 Q7572_RS01835 WP_023188121.1 397250..397723(+) (fimU) [Acinetobacter nosocomialis strain 2014S01-097]
MRGITPQEGFTLVELIVTIAVMAIIAMMAAPSMSNLLKSKRLDTNQRDLISTLSEAKSQAVLGRQNVSVNLNSAASNTAT
LLNWQPTSNNTLTLKNIAADNTQSSLAITTLTFNANGVVSNITQDALISICNSRINKKKNFILTKLGALVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=865706 Q7572_RS01835 WP_023188121.1 397250..397723(+) (fimU) [Acinetobacter nosocomialis strain 2014S01-097]
ATGAGGGGAATTACTCCGCAAGAAGGGTTCACCTTAGTGGAACTCATCGTAACAATTGCAGTCATGGCTATTATTGCAAT
GATGGCTGCGCCGTCTATGTCAAATTTATTAAAAAGTAAACGTTTAGATACTAATCAAAGAGATTTAATTAGCACTCTAT
CTGAGGCGAAAAGTCAGGCTGTGCTTGGTCGTCAGAATGTTTCAGTTAATTTGAATTCAGCGGCTTCTAATACGGCCACT
TTATTAAATTGGCAACCTACTTCTAACAACACCCTAACGCTAAAAAATATAGCTGCTGATAATACCCAAAGTTCTTTAGC
TATCACTACTTTAACATTTAACGCAAATGGAGTTGTGAGTAATATTACTCAGGATGCACTTATATCTATTTGTAATTCAA
GAATAAATAAAAAGAAAAATTTTATACTTACAAAACTTGGAGCTTTGGTTTTTAAAGCTGAGGAGACATGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

85.35

100

0.854