Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   Q7572_RS01840 Genome accession   NZ_CP131878
Coordinates   397717..398277 (+) Length   186 a.a.
NCBI ID   WP_079377028.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain 2014S01-097     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 392717..403277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7572_RS01815 (Q7572_01825) - 394858..394989 (-) 132 WP_102990545.1 hypothetical protein -
  Q7572_RS01820 (Q7572_01830) rpoZ 395028..395306 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  Q7572_RS01825 (Q7572_01835) gmk 395379..396008 (-) 630 WP_002051739.1 guanylate kinase -
  Q7572_RS01830 (Q7572_01840) ispH 396131..397081 (+) 951 WP_002051768.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  Q7572_RS01835 (Q7572_01845) fimU 397250..397723 (+) 474 WP_023188121.1 GspH/FimT family pseudopilin Machinery gene
  Q7572_RS01840 (Q7572_01850) pilV 397717..398277 (+) 561 WP_079377028.1 type IV pilus modification protein PilV Machinery gene
  Q7572_RS01845 (Q7572_01855) pilW 398277..399275 (+) 999 WP_004884688.1 PilW family protein Machinery gene
  Q7572_RS01850 (Q7572_01860) pilX 399272..400087 (+) 816 WP_004711686.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  Q7572_RS01855 - 400087..400272 (+) 186 Protein_357 hypothetical protein -
  Q7572_RS01860 (Q7572_01865) - 400624..401775 (+) 1152 Protein_358 hypothetical protein -
  Q7572_RS01865 (Q7572_01870) pilY2 401788..402270 (+) 483 WP_004884685.1 type IV pilin protein Machinery gene
  Q7572_RS01870 (Q7572_01875) pilE 402267..402692 (+) 426 WP_004884682.1 type IV pilin protein Machinery gene
  Q7572_RS01875 (Q7572_01880) rpsP 402839..403090 (+) 252 WP_000260334.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 19890.00 Da        Isoelectric Point: 8.2254

>NTDB_id=865707 Q7572_RS01840 WP_079377028.1 397717..398277(+) (pilV) [Acinetobacter nosocomialis strain 2014S01-097]
MLMHLNNLKAQAGVGLIEVLVALILLAIGVLGYVALQIRAMDASSEALTKSQAMIVMRGLAENIRTNSVQAGQYPAFVRS
YSNFSSTTVAPTSCFNTPCTPSQLAQFDAYQTAKNADQLGIKITMTNCPGVTSTMTLQRQCLFAFWGKTLPVTSTSGSTS
TVDVSNCITSSGIYVSNSKCLMMETY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=865707 Q7572_RS01840 WP_079377028.1 397717..398277(+) (pilV) [Acinetobacter nosocomialis strain 2014S01-097]
ATGCTAATGCATTTAAACAATCTGAAAGCTCAAGCAGGTGTTGGTTTAATAGAAGTTTTAGTCGCTTTAATACTACTTGC
AATAGGAGTGCTTGGTTATGTAGCACTTCAGATTAGGGCAATGGATGCATCTTCAGAAGCATTAACTAAATCTCAGGCGA
TGATAGTCATGAGGGGGTTAGCTGAAAATATTCGCACAAATAGTGTTCAAGCTGGTCAATATCCAGCATTTGTGCGTAGT
TATAGTAATTTTTCATCAACTACAGTGGCTCCGACTTCCTGCTTTAATACGCCGTGTACGCCTTCACAGCTTGCTCAATT
TGACGCATATCAAACAGCAAAAAATGCAGATCAGCTGGGTATCAAAATTACAATGACAAATTGTCCAGGCGTTACTTCAA
CTATGACTTTACAAAGGCAATGTTTATTCGCTTTTTGGGGAAAAACTTTACCAGTAACGAGTACAAGTGGGAGTACATCA
ACTGTAGATGTATCAAATTGCATCACTAGTAGTGGAATTTATGTCTCTAATTCTAAGTGTTTAATGATGGAGACATATTG
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

75.269

100

0.753
  pilV Acinetobacter baylyi ADP1

35.789

100

0.366