Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   Q7572_RS01725 Genome accession   NZ_CP131878
Coordinates   371656..373821 (+) Length   721 a.a.
NCBI ID   WP_004884727.1    Uniprot ID   A0A2L1VM20
Organism   Acinetobacter nosocomialis strain 2014S01-097     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 366656..378821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7572_RS01705 (Q7572_01715) comM 368610..369668 (+) 1059 WP_004711654.1 pilus assembly protein PilM Machinery gene
  Q7572_RS01710 (Q7572_01720) - 369668..370273 (+) 606 Protein_328 PilN domain-containing protein -
  Q7572_RS01715 (Q7572_01725) - 370310..371054 (+) 745 Protein_329 type 4a pilus biogenesis protein PilO -
  Q7572_RS01720 (Q7572_01730) - 371065..371593 (+) 529 Protein_330 pilus assembly protein PilP -
  Q7572_RS01725 (Q7572_01735) pilQ 371656..373821 (+) 2166 WP_004884727.1 type IV pilus secretin PilQ family protein Machinery gene
  Q7572_RS01730 (Q7572_01740) aroK 373833..374402 (+) 570 WP_002051689.1 shikimate kinase AroK -
  Q7572_RS01735 (Q7572_01745) aroB 374431..375513 (+) 1083 WP_004884725.1 3-dehydroquinate synthase -
  Q7572_RS01740 (Q7572_01750) - 375529..376404 (+) 876 WP_004884723.1 hypothetical protein -

Sequence

Protein


Download         Length: 721 a.a.        Molecular weight: 77838.18 Da        Isoelectric Point: 6.5404

>NTDB_id=865704 Q7572_RS01725 WP_004884727.1 371656..373821(+) (pilQ) [Acinetobacter nosocomialis strain 2014S01-097]
MNQVFRQFSMGAVAVAIMQAASAQVSMTNIVPTQVAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFDKAQQSLKQSKI
AVATNEASSVDVTSDDQRSRLTVNLKDAGAFTTRVEGNTFILKINSVQPNNKPVPVVTAQPQGISNIGFQRGSQGEGLVV
VDLLGSNTPVDVQQQGSKVVIRTLGTKIPAHLARRLNVNDFATPVSSIDAYNDKGAGVITIQSSGSYEYMAYQAENKLTI
SLKRPQDKNVTSLYKTPNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEEEEAKAVAQSVKLAPLQTEYIQLKYAKAGDIMGLITQGSNNSNGLQHTSGGGTSTSTNL
NTGVDSLGNNVGSLLSPRGTITQDDRTNTLIINDTAQSIDQIRKMIDLLDVQVKQVMVEARIVRASTSFTKELGVKWGIL
SQGITNNKNLLVGGSETTLWNLREPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADG
YGEVISTPKVMTADKQTAKVATGQQVPYQTTTNSAAGSTATTSFKDALLSLNVTPSITPDGKIQMKLDISKDSVAGAAPN
GELILNKNNINTNVLVDNGETVILGGVFEQTTTNSQTKVPFFGDIPIVGHLFRKDVKSDDKQELLIFVTPRIVNDTLARN
H

Nucleotide


Download         Length: 2166 bp        

>NTDB_id=865704 Q7572_RS01725 WP_004884727.1 371656..373821(+) (pilQ) [Acinetobacter nosocomialis strain 2014S01-097]
ATGAATCAAGTATTCCGTCAGTTTTCTATGGGGGCTGTAGCTGTTGCAATTATGCAGGCTGCATCTGCACAGGTCAGCAT
GACCAATATAGTACCAACGCAAGTTGCAGGTCAGGGCACAGAAATTAGAGTTATGTTTAATGGATTGCCACCACAGCCAC
AGGCTTACCAACTTGAAAATCCGTCACGTTTAATATTAGATTTTGATAAAGCTCAACAAAGTTTAAAACAGTCTAAAATT
GCTGTTGCAACCAATGAAGCAAGCTCTGTAGATGTAACTTCAGATGATCAACGTTCACGTTTGACTGTAAATTTAAAAGA
TGCTGGAGCGTTTACAACACGTGTGGAAGGTAATACTTTCATTTTAAAAATTAATTCGGTCCAACCGAATAATAAACCTG
TACCAGTAGTTACTGCACAACCACAAGGTATTTCAAACATTGGATTTCAGCGTGGTAGTCAGGGAGAAGGTTTAGTTGTT
GTGGATCTTTTGGGAAGTAATACACCTGTAGATGTTCAACAACAAGGCAGTAAAGTTGTTATAAGAACTTTAGGTACAAA
AATTCCGGCACATTTGGCGCGTCGTCTAAATGTAAATGATTTTGCAACACCAGTCTCAAGTATTGATGCTTATAATGATA
AAGGTGCTGGTGTAATTACTATTCAGTCATCTGGTAGCTACGAATACATGGCATATCAGGCTGAAAATAAGCTCACAATC
AGTTTGAAACGACCACAAGATAAAAATGTAACTTCTTTATATAAAACGCCAAATTATTCTGGAAATAAGCTTTCGCTAGA
TTTTCAAGACATCGAAGTGCGCCGTGTTTTACAGCTCCTTGCTGATTTTACTGGAATCAATATGGTGGCTGCTGATAGTG
TGCAAGGTAATATCACGCTACGTTTGAAAGACGTACCTTGGGATCAGGCTCTGGATATTATTTTAAAAACTAAAAATCTT
GATAAACGTCGTAATGGGAATGTGATTTGGATTGCTCCTGTTGCAGAGTTGATTAAAGCGGAAGAGGAAGAAGCAAAAGC
TGTAGCGCAAAGTGTAAAACTTGCTCCGTTACAGACAGAGTATATTCAACTTAAATACGCTAAAGCTGGCGATATTATGG
GTTTAATTACTCAAGGCTCAAATAATAGTAATGGCTTACAACATACTTCTGGTGGAGGAACTTCAACTTCAACCAATTTA
AATACTGGCGTTGATAGTCTTGGGAATAATGTGGGTAGTTTACTTAGCCCTCGCGGTACCATTACTCAAGATGACCGAAC
TAATACTCTTATTATTAATGATACTGCTCAGTCGATTGATCAAATTCGAAAAATGATTGACTTGCTTGATGTGCAAGTTA
AACAGGTTATGGTTGAAGCACGTATTGTGAGAGCGTCTACGTCGTTTACCAAAGAACTTGGTGTGAAGTGGGGCATTCTT
TCGCAAGGTATTACCAATAATAAAAATTTGTTGGTTGGTGGTAGTGAAACAACTTTATGGAATCTGCGCGAACCTAAAAA
AGATGAAACTACAGGTGGCTATAAATATACGATTGAGCGCCCAGATAATTTAAACGTTGATTTGGGGGTTTCTAATCCTG
CCGGTAGTATTGCCTTTGGTCTTATTAGTATGTCGGACTTCATGTTGGATCTTGAGCTCTCAGCTTTACAAGCCGATGGT
TATGGTGAAGTAATTTCAACGCCTAAAGTGATGACCGCCGATAAGCAAACTGCGAAAGTAGCAACAGGTCAACAAGTTCC
ATATCAAACTACGACAAATTCTGCTGCAGGCTCAACAGCCACAACATCATTTAAAGATGCATTACTAAGCCTAAATGTAA
CTCCAAGTATTACGCCTGACGGTAAGATTCAAATGAAATTGGATATTTCTAAGGACTCTGTAGCAGGTGCGGCCCCAAAT
GGTGAATTAATTCTGAATAAGAATAATATTAATACCAATGTGCTGGTTGATAATGGAGAGACCGTTATTTTAGGTGGTGT
ATTCGAGCAAACAACGACGAATTCTCAAACCAAAGTTCCGTTTTTTGGTGATATTCCTATTGTAGGGCATTTATTTAGAA
AAGATGTAAAGTCTGATGATAAGCAAGAATTATTGATTTTCGTAACACCACGAATTGTTAATGACACTTTAGCTAGAAAT
CATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(555-713)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-455)

AMIN domain (AMIN)

(38-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L1VM20

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

97.226

100

0.972
  pilQ Acinetobacter baumannii strain A118

97.087

100

0.971
  comQ Acinetobacter baylyi ADP1

75.104

100

0.753
  pilQ Pseudomonas aeruginosa PAK

39.702

100

0.406