Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q7572_RS01090 Genome accession   NZ_CP131878
Coordinates   242970..243554 (+) Length   194 a.a.
NCBI ID   WP_002053972.1    Uniprot ID   A0A241YN96
Organism   Acinetobacter nosocomialis strain 2014S01-097     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 237970..248554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7572_RS01065 (Q7572_01070) - 238042..238848 (-) 807 WP_004884868.1 SDR family oxidoreductase -
  Q7572_RS01070 (Q7572_01075) - 238952..239323 (-) 372 WP_004704999.1 MerR family transcriptional regulator -
  Q7572_RS01075 (Q7572_01080) tenA 239388..240062 (-) 675 WP_004884867.1 thiaminase II -
  Q7572_RS01080 (Q7572_01085) - 240325..241407 (+) 1083 WP_342049651.1 DUF475 domain-containing protein -
  Q7572_RS01085 (Q7572_01090) - 241554..242918 (+) 1365 WP_004711530.1 MFS transporter -
  Q7572_RS01090 (Q7572_01095) ssb 242970..243554 (+) 585 WP_002053972.1 single-stranded DNA-binding protein Machinery gene
  Q7572_RS01095 (Q7572_01100) - 243595..243918 (-) 324 WP_004884866.1 AzlD domain-containing protein -
  Q7572_RS01100 (Q7572_01105) - 243915..244610 (-) 696 WP_004884865.1 AzlC family ABC transporter permease -
  Q7572_RS01105 (Q7572_01110) - 244679..245227 (+) 549 WP_002117406.1 XRE family transcriptional regulator -
  Q7572_RS01110 (Q7572_01115) - 245533..246975 (+) 1443 WP_004884864.1 amino acid permease -
  Q7572_RS01115 (Q7572_01120) - 247041..248540 (-) 1500 WP_004884862.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21008.83 Da        Isoelectric Point: 6.4822

>NTDB_id=865702 Q7572_RS01090 WP_002053972.1 242970..243554(+) (ssb) [Acinetobacter nosocomialis strain 2014S01-097]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKTSGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGGGYGQNNGGGYGGQGG
FGNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=865702 Q7572_RS01090 WP_002053972.1 242970..243554(+) (ssb) [Acinetobacter nosocomialis strain 2014S01-097]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTAACCCAGTTTTCAATCGCGACAAGTGAAGTTTGGACCGATAAAACGTCAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTATATCGAAGGT
TCATTACGTACGCGTCAGTGGACAGACCAAAATGGTCAGGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAATGCACCTCAAC
AAGGTGGCGGTTATCAAAATAACAACCAAGGTGGCGGCTACGGTCAAAACAATGGCGGTGGTTATGGTGGCCAAGGTGGT
TTCGGTAATGGTGGTAACAGCCCGCAAGGTGGTGGTTTTGCTCCTAAAGCGCCGCAACAACCAGCATCTGCACCAGCTGA
TTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A241YN96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.746

100

0.526
  ssb Vibrio cholerae strain A1552

43.5

100

0.448
  ssb Neisseria meningitidis MC58

37.563

100

0.381
  ssb Neisseria gonorrhoeae MS11

37.563

100

0.381