Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K5628_RS18565 Genome accession   NZ_AP024613
Coordinates   4164569..4165279 (-) Length   236 a.a.
NCBI ID   WP_208147775.1    Uniprot ID   A0AAD1KDP3
Organism   Shewanella algae strain TUM17379     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4159569..4170279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5628_RS18555 (TUM17379_36620) - 4162345..4163259 (-) 915 WP_208147773.1 LysR family transcriptional regulator -
  K5628_RS18560 (TUM17379_36630) - 4163385..4164494 (+) 1110 WP_208147774.1 HisA/HisF-related TIM barrel protein -
  K5628_RS18565 (TUM17379_36640) ssb 4164569..4165279 (-) 711 WP_208147775.1 single-stranded DNA-binding protein Machinery gene
  K5628_RS18570 (TUM17379_36650) - 4165314..4166681 (-) 1368 WP_156018659.1 MFS transporter -
  K5628_RS18575 (TUM17379_36660) uvrA 4166902..4169724 (+) 2823 WP_101058423.1 excinuclease ABC subunit UvrA -
  K5628_RS18580 (TUM17379_36670) - 4169732..4170082 (+) 351 WP_129586019.1 hypothetical protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 25939.29 Da        Isoelectric Point: 5.9130

>NTDB_id=86565 K5628_RS18565 WP_208147775.1 4164569..4165279(-) (ssb) [Shewanella algae strain TUM17379]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVMFGKLAEIAGEYLRKGSQVYLE
GKLQTRKWKDQSGQDKYTTEVVVDMGGTMQMLGGRNQNQGGISQGGNQGGMNQGGMNQSQGSYGGGQAQSQYNAPQQSGG
YQPKPAQQPQQPQQQYNAPQQQSYGQQQNSGYAPKPQQPAPQQQAAPQQRPAPQPQPQQQNYTPDLDDGWDDDIPF

Nucleotide


Download         Length: 711 bp        

>NTDB_id=86565 K5628_RS18565 WP_208147775.1 4164569..4165279(-) (ssb) [Shewanella algae strain TUM17379]
ATGGCCAGTCGTGGTGTTAATAAGGTAATTCTGGTGGGCAATCTGGGACAGGACCCAGAGGTGCGCTACATGCCAAACGG
CAACGCCGTAGCGAATATCACAGTGGCCACCAGTGAGTCATGGAAGGACCAACAGGGCCAACAGCAAGAGCGTACCGAGT
GGCACAGGGTTGTCATGTTCGGCAAGCTGGCTGAAATTGCCGGTGAGTACCTGCGCAAAGGCTCGCAAGTGTATCTGGAA
GGCAAGCTGCAGACCCGCAAGTGGAAAGATCAGAGCGGTCAGGACAAGTACACCACTGAAGTGGTTGTCGATATGGGCGG
TACCATGCAGATGCTTGGTGGCCGTAACCAAAACCAAGGCGGTATAAGCCAAGGCGGCAATCAGGGCGGTATGAACCAAG
GTGGTATGAACCAAAGCCAAGGTAGTTACGGTGGTGGTCAGGCACAGTCTCAATACAATGCGCCACAGCAGTCCGGCGGC
TATCAGCCCAAGCCTGCTCAGCAACCGCAGCAGCCACAACAACAGTACAACGCGCCGCAGCAGCAAAGCTATGGTCAGCA
GCAGAACTCAGGTTATGCGCCTAAGCCACAGCAGCCAGCGCCGCAACAACAGGCAGCTCCGCAACAGCGGCCGGCACCAC
AGCCTCAGCCACAACAGCAGAACTACACGCCGGATCTGGATGACGGCTGGGATGATGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.393

100

0.551
  ssb Glaesserella parasuis strain SC1401

45.923

98.729

0.453
  ssb Neisseria gonorrhoeae MS11

43.29

97.881

0.424
  ssb Neisseria meningitidis MC58

42.424

97.881

0.415

Multiple sequence alignment