Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q7574_RS00990 Genome accession   NZ_CP131867
Coordinates   216931..217518 (+) Length   195 a.a.
NCBI ID   WP_005066890.1    Uniprot ID   -
Organism   Acinetobacter pittii strain 2012N08-034     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 211931..222518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7574_RS00965 (Q7574_00965) - 212006..212806 (-) 801 WP_151282550.1 SDR family oxidoreductase -
  Q7574_RS00970 (Q7574_00970) - 212910..213281 (-) 372 WP_068929809.1 MerR family transcriptional regulator -
  Q7574_RS00975 (Q7574_00975) tenA 213348..214022 (-) 675 WP_005066884.1 thiaminase II -
  Q7574_RS00980 (Q7574_00980) - 214285..215367 (+) 1083 WP_108009816.1 DUF475 domain-containing protein -
  Q7574_RS00985 (Q7574_00985) yajR 215515..216879 (+) 1365 WP_342063526.1 MFS transporter -
  Q7574_RS00990 (Q7574_00990) ssb 216931..217518 (+) 588 WP_005066890.1 single-stranded DNA-binding protein Machinery gene
  Q7574_RS00995 (Q7574_00995) - 217559..217882 (-) 324 WP_002117414.1 AzlD domain-containing protein -
  Q7574_RS01000 (Q7574_01000) - 217879..218574 (-) 696 WP_005804464.1 AzlC family ABC transporter permease -
  Q7574_RS01005 (Q7574_01005) ydcN 218643..219191 (+) 549 WP_002117406.1 XRE family transcriptional regulator -
  Q7574_RS01010 (Q7574_01010) - 219246..219689 (-) 444 WP_068564497.1 MarR family transcriptional regulator -
  Q7574_RS01015 (Q7574_01015) - 219961..220368 (-) 408 WP_342063527.1 EVE domain-containing protein -
  Q7574_RS01020 (Q7574_01020) - 220365..220826 (-) 462 WP_060465064.1 hypothetical protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21223.01 Da        Isoelectric Point: 6.4822

>NTDB_id=865612 Q7574_RS00990 WP_005066890.1 216931..217518(+) (ssb) [Acinetobacter pittii strain 2012N08-034]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGNQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=865612 Q7574_RS00990 WP_005066890.1 216931..217518(+) (ssb) [Acinetobacter pittii strain 2012N08-034]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACCGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTATGGCCAAAACAGCGGTGGTTATGGTAACCAAGGT
GGTTTCGGTAATGGTGGAAGCAACCCTCAAGCGGGTGGTTTTGCGCCTAAAGCGCCACAACAACCAGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.394

100

0.4
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385