Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   WHO38_RS15210 Genome accession   NZ_CP148124
Coordinates   2860573..2861268 (-) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis isolate FELIX_MS521     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2855573..2866268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO38_RS15185 minD 2856509..2857315 (-) 807 WP_004398624.1 septum site-determining protein MinD -
  WHO38_RS15190 minC 2857317..2857997 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  WHO38_RS15195 mreD 2858050..2858568 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  WHO38_RS15200 mreC 2858565..2859437 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  WHO38_RS15205 mreB 2859468..2860481 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  WHO38_RS15210 ysxA/radC 2860573..2861268 (-) 696 WP_003246034.1 DNA repair protein RadC Machinery gene
  WHO38_RS15215 maf 2861305..2861874 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  WHO38_RS15220 spoIIB 2862027..2863025 (-) 999 WP_004398782.1 stage II sporulation protein SpoIIB -
  WHO38_RS15225 comC 2863159..2863905 (-) 747 WP_010886586.1 A24 family peptidase Machinery gene
  WHO38_RS15230 folC 2864045..2865337 (-) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=865610 WHO38_RS15210 WP_003246034.1 2860573..2861268(-) (ysxA/radC) [Bacillus subtilis isolate FELIX_MS521]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=865610 WHO38_RS15210 WP_003246034.1 2860573..2861268(-) (ysxA/radC) [Bacillus subtilis isolate FELIX_MS521]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGGGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424