Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K5626_RS18250 Genome accession   NZ_AP024610
Coordinates   4109176..4109889 (-) Length   237 a.a.
NCBI ID   WP_221052369.1    Uniprot ID   -
Organism   Shewanella algae strain TUM4442     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4104176..4114889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5626_RS18240 (TUM4442_35830) - 4106963..4107877 (-) 915 WP_221052367.1 LysR family transcriptional regulator -
  K5626_RS18245 (TUM4442_35840) - 4108003..4109112 (+) 1110 WP_221052368.1 HisA/HisF-related TIM barrel protein -
  K5626_RS18250 (TUM4442_35850) ssb 4109176..4109889 (-) 714 WP_221052369.1 single-stranded DNA-binding protein Machinery gene
  K5626_RS18255 (TUM4442_35860) - 4109924..4111291 (-) 1368 WP_025010184.1 MFS transporter -
  K5626_RS18260 (TUM4442_35870) uvrA 4111513..4114335 (+) 2823 WP_167716905.1 excinuclease ABC subunit UvrA -
  K5626_RS18265 (TUM4442_35880) - 4114343..4114693 (+) 351 WP_129586019.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26044.40 Da        Isoelectric Point: 5.9130

>NTDB_id=86517 K5626_RS18250 WP_221052369.1 4109176..4109889(-) (ssb) [Shewanella algae strain TUM4442]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVMFGKLAEIAGEYLRKGSQVYLE
GKLQTRKWKDQSGQDKYTTEVVVDMGGTMQMLGGRNQNQGGMSQGGNQGGMNQGGMNQSQGSYGGGQAQSQSQYNAPQQS
GGYQPKPAQQPQQPQQQYNAPQQQSYGQQQNSGYAPKPQQPAPQQAAPQQRPAPQPQPQQQNYTPDLDDGWDDDIPF

Nucleotide


Download         Length: 714 bp        

>NTDB_id=86517 K5626_RS18250 WP_221052369.1 4109176..4109889(-) (ssb) [Shewanella algae strain TUM4442]
ATGGCCAGTCGTGGTGTTAATAAGGTAATTCTGGTGGGCAATCTGGGACAGGACCCAGAGGTGCGCTACATGCCAAACGG
CAACGCCGTAGCGAATATCACAGTGGCCACCAGTGAGTCATGGAAAGACCAGCAGGGCCAACAGCAAGAGCGTACCGAAT
GGCACAGGGTTGTCATGTTCGGCAAGCTGGCTGAAATTGCCGGTGAGTACCTGCGCAAAGGCTCGCAAGTGTATTTGGAA
GGCAAGCTGCAGACCCGCAAGTGGAAAGATCAGAGCGGTCAGGACAAGTACACCACTGAAGTGGTTGTCGATATGGGCGG
CACCATGCAGATGCTGGGTGGCCGTAACCAAAATCAAGGTGGTATGAGCCAAGGCGGCAATCAGGGTGGTATGAACCAAG
GTGGTATGAACCAAAGCCAAGGTAGTTACGGTGGTGGTCAGGCACAGTCTCAATCTCAATACAATGCGCCACAGCAGTCC
GGCGGCTATCAGCCCAAGCCTGCTCAGCAACCGCAGCAGCCACAACAGCAGTACAACGCGCCGCAGCAGCAAAGCTATGG
TCAGCAGCAGAACTCTGGTTATGCGCCCAAGCCACAGCAGCCAGCGCCGCAACAGGCGGCTCCACAGCAGCGTCCGGCAC
CACAGCCTCAGCCACAACAGCAGAACTACACGCCGGATCTGGATGACGGCTGGGATGATGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.72

100

0.532
  ssb Glaesserella parasuis strain SC1401

46.581

98.734

0.46
  ssb Neisseria gonorrhoeae MS11

42.672

97.89

0.418
  ssb Neisseria meningitidis MC58

41.81

97.89

0.409

Multiple sequence alignment