Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   Q7609_RS10050 Genome accession   NZ_CP131725
Coordinates   1990889..1991236 (-) Length   115 a.a.
NCBI ID   WP_005651636.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2018S05-172     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1985889..1996236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7609_RS10025 (Q7609_10015) otnI 1986356..1987132 (-) 777 WP_005693349.1 2-oxo-tetronate isomerase -
  Q7609_RS10030 (Q7609_10020) otnC 1987135..1987767 (-) 633 WP_005647883.1 3-oxo-tetronate 4-phosphate decarboxylase -
  Q7609_RS10035 (Q7609_10025) otnK 1987764..1989005 (-) 1242 WP_005651645.1 3-oxo-tetronate kinase -
  Q7609_RS10040 (Q7609_10030) ltnD 1989008..1989913 (-) 906 WP_005651643.1 L-threonate dehydrogenase -
  Q7609_RS10045 (Q7609_10035) - 1990084..1990842 (+) 759 WP_015702000.1 DeoR/GlpR family DNA-binding transcription regulator -
  Q7609_RS10050 (Q7609_10040) comE1/comEA 1990889..1991236 (-) 348 WP_005651636.1 helix-hairpin-helix domain-containing protein Machinery gene
  Q7609_RS10055 (Q7609_10045) ispH 1991405..1992349 (-) 945 WP_005651634.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  Q7609_RS10060 (Q7609_10050) lspA 1992346..1992861 (-) 516 WP_005651632.1 signal peptidase II -
  Q7609_RS10065 (Q7609_10055) - 1992931..1994474 (-) 1544 Protein_1930 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12391.33 Da        Isoelectric Point: 8.0085

>NTDB_id=864881 Q7609_RS10050 WP_005651636.1 1990889..1991236(-) (comE1/comEA) [Haemophilus influenzae strain 2018S05-172]
MKLMKTLFTLVVLCGALVVSSSFAEEKATEQTAQPVVATQAEAQIALAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=864881 Q7609_RS10050 WP_005651636.1 1990889..1991236(-) (comE1/comEA) [Haemophilus influenzae strain 2018S05-172]
ATGAAATTAATGAAAACATTATTCACTTTGGTTGTATTGTGTGGTGCGCTGGTTGTTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAACCTGTTGTAGCAACTCAAGCTGAAGCTCAAATAGCACTAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

93.75

97.391

0.913
  comEA/comE1 Glaesserella parasuis strain SC1401

58.772

99.13

0.583
  comEA Vibrio campbellii strain DS40M4

40.179

97.391

0.391
  comEA Acinetobacter baumannii strain A118

32.061

100

0.365