Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   Q7609_RS03005 Genome accession   NZ_CP131725
Coordinates   605711..606124 (+) Length   137 a.a.
NCBI ID   WP_342123373.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2018S05-172     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 600711..611124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7609_RS02985 (Q7609_02985) - 601193..603793 (-) 2601 WP_342123371.1 penicillin-binding protein 1A -
  Q7609_RS02990 (Q7609_02990) comA 603892..604689 (+) 798 WP_116965314.1 competence protein ComA Machinery gene
  Q7609_RS02995 (Q7609_02995) comB 604690..605196 (+) 507 WP_005649305.1 competence protein ComB Machinery gene
  Q7609_RS03000 (Q7609_03000) comC 605193..605714 (+) 522 WP_342123372.1 competence protein ComC Machinery gene
  Q7609_RS03005 (Q7609_03005) comD 605711..606124 (+) 414 WP_342123373.1 pilus assembly protein PilP Machinery gene
  Q7609_RS03010 (Q7609_03010) comE 606134..607477 (+) 1344 WP_342123374.1 type IV pilus secretin PilQ Machinery gene
  Q7609_RS03015 (Q7609_03015) tnpA 607474..607929 (+) 456 WP_005652127.1 IS200/IS605 family transposase -
  Q7609_RS03020 (Q7609_03020) - 608301..608987 (+) 687 WP_005652129.1 ComF family protein -
  Q7609_RS03025 (Q7609_03025) nfuA 609063..609659 (+) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -
  Q7609_RS03030 (Q7609_03030) nudC 609726..610520 (+) 795 WP_014550416.1 NAD(+) diphosphatase -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15586.66 Da        Isoelectric Point: 4.3405

>NTDB_id=864864 Q7609_RS03005 WP_342123373.1 605711..606124(+) (comD) [Haemophilus influenzae strain 2018S05-172]
MKYWFFLTALLFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQALQVYSVLEGVDVAQEGYIVEKIDQNNVQFMRKLGDQCDGSEWKKLSF

Nucleotide


Download         Length: 414 bp        

>NTDB_id=864864 Q7609_RS03005 WP_342123373.1 605711..606124(+) (comD) [Haemophilus influenzae strain 2018S05-172]
ATGAAGTATTGGTTTTTCCTAACAGCATTGCTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GTGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTAGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAGGCTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCGATCAAAACAATGTTCAATTTATGCGCAAACTCGGGGATCAATGTGATGGTAGTGAATGGAAAA
AATTAAGTTTTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Haemophilus influenzae Rd KW20

92.701

100

0.927
  comD Haemophilus influenzae 86-028NP

91.971

100

0.92