Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   Q7609_RS02990 Genome accession   NZ_CP131725
Coordinates   603892..604689 (+) Length   265 a.a.
NCBI ID   WP_116965314.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2018S05-172     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 598892..609689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7609_RS02970 (Q7609_02970) recR 599129..599731 (-) 603 WP_005652114.1 recombination mediator RecR -
  Q7609_RS02975 (Q7609_02975) - 599789..600118 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  Q7609_RS02980 (Q7609_02980) - 600271..601116 (-) 846 WP_005652116.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  Q7609_RS02985 (Q7609_02985) - 601193..603793 (-) 2601 WP_342123371.1 penicillin-binding protein 1A -
  Q7609_RS02990 (Q7609_02990) comA 603892..604689 (+) 798 WP_116965314.1 competence protein ComA Machinery gene
  Q7609_RS02995 (Q7609_02995) comB 604690..605196 (+) 507 WP_005649305.1 competence protein ComB Machinery gene
  Q7609_RS03000 (Q7609_03000) comC 605193..605714 (+) 522 WP_342123372.1 competence protein ComC Machinery gene
  Q7609_RS03005 (Q7609_03005) comD 605711..606124 (+) 414 WP_342123373.1 pilus assembly protein PilP Machinery gene
  Q7609_RS03010 (Q7609_03010) comE 606134..607477 (+) 1344 WP_342123374.1 type IV pilus secretin PilQ Machinery gene
  Q7609_RS03015 (Q7609_03015) tnpA 607474..607929 (+) 456 WP_005652127.1 IS200/IS605 family transposase -
  Q7609_RS03020 (Q7609_03020) - 608301..608987 (+) 687 WP_005652129.1 ComF family protein -
  Q7609_RS03025 (Q7609_03025) nfuA 609063..609659 (+) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31626.06 Da        Isoelectric Point: 6.0249

>NTDB_id=864861 Q7609_RS02990 WP_116965314.1 603892..604689(+) (comA) [Haemophilus influenzae strain 2018S05-172]
MQFSLKNYRTLQIGIHRKQSYFDFVWFDDLEQPQSYQIFVNDRYFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPIFLEELWFDYRSTPLKQGFRLEVTAIRKSTAQTYLQDFQPFKINVLDVVSNAVLRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSYTPLLENWQRV
ETELPFIALGNALWQKDLHQQKVGG

Nucleotide


Download         Length: 798 bp        

>NTDB_id=864861 Q7609_RS02990 WP_116965314.1 603892..604689(+) (comA) [Haemophilus influenzae strain 2018S05-172]
ATGCAATTCTCCCTGAAAAATTACCGCACTTTACAAATCGGCATTCATCGTAAGCAGAGTTATTTTGATTTTGTGTGGTT
TGATGATCTTGAGCAGCCACAAAGTTATCAAATCTTTGTTAATGATCGTTATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTGCAGTTTGTAGCAAGCATTCCCGCCCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAAAAAGAGCTGCCTATTTTTTT
AGAAGAATTGTGGTTTGATTATCGTTCTACCCCGTTAAAGCAAGGTTTTCGATTAGAGGTTACTGCAATTCGTAAAAGTA
CTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAATGTATTGGATGTTGTGTCAAATGCTGTTTTGCGTGCA
TTTCAATATCTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGCTTGGCGAT
TTGTGAAAGATCTCAGCAATCACAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGACAACTTGAACAAGTTTTTGTTTATCAAATTCCCTCAAGTTATACGCCATTACTAGAAAATTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCGCTTGGTAACGCGCTATGGCAAAAAGATTTACATCAACAAAAAGTGGGTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

97.736

100

0.977
  comA Haemophilus influenzae 86-028NP

96.226

100

0.962