Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K5625_RS02945 Genome accession   NZ_AP024609
Coordinates   643387..644103 (+) Length   238 a.a.
NCBI ID   WP_215773887.1    Uniprot ID   -
Organism   Shewanella algae strain ATCC 49138     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 638387..649103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5625_RS02930 (TUM3811_05780) - 638583..638933 (-) 351 WP_129586019.1 hypothetical protein -
  K5625_RS02935 (TUM3811_05790) uvrA 638941..641763 (-) 2823 WP_221051728.1 excinuclease ABC subunit UvrA -
  K5625_RS02940 (TUM3811_05800) - 641985..643352 (+) 1368 WP_025010184.1 MFS transporter -
  K5625_RS02945 (TUM3811_05810) ssb 643387..644103 (+) 717 WP_215773887.1 single-stranded DNA-binding protein Machinery gene
  K5625_RS02950 (TUM3811_05830) fdnG 644989..648003 (+) 3015 WP_144380288.1 formate dehydrogenase-N subunit alpha -
  K5625_RS02955 (TUM3811_05840) fdxH 648006..648929 (+) 924 WP_025887978.1 formate dehydrogenase subunit beta -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26169.53 Da        Isoelectric Point: 5.9130

>NTDB_id=86479 K5625_RS02945 WP_215773887.1 643387..644103(+) (ssb) [Shewanella algae strain ATCC 49138]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVMFGKLAEIAGEYLRKGSQVYLE
GKLQTRKWKDQSGQDKYTTEVVVDMGGTMQMLGGRNQNQGGMSQGGNQGGMNQGGMNQNQGGYGGGQAQSQSQYNAPQQS
GGYQPKPAQQPQQPQQQYNAPQQQSYGQQQNSGYAPKPQQPAPQQQAAPQQRPAPQPQPQQQNYTPDLDDGWDDDIPF

Nucleotide


Download         Length: 717 bp        

>NTDB_id=86479 K5625_RS02945 WP_215773887.1 643387..644103(+) (ssb) [Shewanella algae strain ATCC 49138]
ATGGCCAGTCGTGGTGTTAATAAGGTAATTCTGGTGGGCAATCTGGGACAGGACCCAGAGGTGCGCTACATGCCAAACGG
CAACGCCGTAGCGAATATCACAGTGGCCACCAGTGAGTCATGGAAAGACCAGCAGGGCCAACAGCAAGAGCGTACCGAGT
GGCACAGGGTTGTCATGTTCGGCAAGCTGGCTGAAATTGCCGGTGAATATCTGCGCAAAGGCTCGCAAGTGTATCTGGAA
GGCAAGCTGCAGACCCGCAAGTGGAAAGATCAGAGCGGTCAGGACAAGTACACCACTGAAGTGGTTGTTGATATGGGCGG
TACCATGCAGATGCTGGGTGGCCGTAACCAAAACCAAGGCGGTATGAGCCAGGGCGGCAATCAGGGCGGTATGAACCAAG
GTGGTATGAACCAAAACCAAGGTGGTTACGGCGGTGGTCAGGCACAGTCTCAATCTCAATACAATGCGCCACAGCAGTCC
GGCGGCTATCAGCCCAAGCCTGCTCAGCAACCGCAGCAGCCACAACAGCAGTACAACGCGCCGCAGCAGCAAAGCTATGG
TCAGCAGCAGAACTCAGGTTATGCGCCCAAGCCACAGCAGCCCGCGCCGCAACAACAGGCTGCTCCGCAACAGCGGCCGG
CACCACAGCCTCAGCCACAACAGCAGAACTACACGCCGGATCTGGATGACGGCTGGGATGATGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.167

100

0.546
  ssb Glaesserella parasuis strain SC1401

46.383

98.739

0.458
  ssb Neisseria gonorrhoeae MS11

42.489

97.899

0.416
  ssb Neisseria meningitidis MC58

41.631

97.899

0.408

Multiple sequence alignment