Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   Q7614_RS00045 Genome accession   NZ_CP131719
Coordinates   14615..15736 (+) Length   373 a.a.
NCBI ID   WP_342121750.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2016S09-327     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 9615..20736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7614_RS00030 (Q7614_00030) leuC 9766..11175 (-) 1410 WP_005693329.1 3-isopropylmalate dehydratase large subunit -
  Q7614_RS00035 (Q7614_00035) leuB 11350..12426 (-) 1077 WP_061723824.1 3-isopropylmalate dehydrogenase -
  Q7614_RS00040 (Q7614_00040) leuA 12512..14059 (-) 1548 WP_342121749.1 2-isopropylmalate synthase -
  Q7614_RS00045 (Q7614_00045) dprA 14615..15736 (+) 1122 WP_342121750.1 DNA-processing protein DprA Machinery gene
  Q7614_RS00050 (Q7614_00050) yaaA 15789..16565 (+) 777 WP_105886388.1 peroxide stress protein YaaA -
  Q7614_RS00055 (Q7614_00055) - 16558..17139 (+) 582 WP_061723820.1 hypothetical protein -
  Q7614_RS00060 (Q7614_00060) pfkA 17235..18200 (+) 966 WP_005664214.1 6-phosphofructokinase -
  Q7614_RS00065 (Q7614_00065) smpB 18439..18924 (+) 486 WP_005659251.1 SsrA-binding protein SmpB -
  Q7614_RS00070 (Q7614_00070) fis 19019..19318 (-) 300 WP_005651583.1 DNA-binding transcriptional regulator Fis -
  Q7614_RS00075 (Q7614_00075) dusB 19312..20292 (-) 981 WP_342122542.1 tRNA dihydrouridine synthase DusB -

Sequence


Protein


Download         Length: 373 a.a.        Molecular weight: 41658.77 Da        Isoelectric Point: 6.4124

>NTDB_id=864663 Q7614_RS00045 WP_342121750.1 14615..15736(+) (dprA) [Haemophilus influenzae strain 2016S09-327]
MNDITYTLLRLMQVPKLGGVGIDKILSNITLNELLNYDDVAFRQMGWGAIQIRRWFKPEAKFIEPALVWSQKEGNHLVNY
FSPFYPFLLKQTASFPPLLFVKGNLTALSQRQMAMVGSRYCTTYGEYWAKHFATELSLAGFTITSGLALGIDGHCHQAVV
NIQGQTIAVLGSGLEQIYPSKHQRLSAQIIENNGALVSEFLPNQAPIAANFPRRNRIISGLSVGTLVVEATEKSGSLITA
RYALEQNREVFAVPGNIQNESSQGCHRLIKQGAMLVENAKDILETLYQHSIHSQTEIDFDQIAVPNYTPPPDPRRLVEAP
SHPKLYSRIGYTPVSIDDLAEEFNLSVDVLLVQLLDLELQDLIMSENGLYKRV

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=864663 Q7614_RS00045 WP_342121750.1 14615..15736(+) (dprA) [Haemophilus influenzae strain 2016S09-327]
ATGAATGACATTACCTACACATTACTCCGTTTAATGCAAGTGCCTAAACTTGGCGGCGTTGGCATTGATAAAATTTTGTC
CAATATTACCTTAAATGAATTACTTAATTATGATGATGTTGCTTTCCGACAAATGGGATGGGGAGCCATTCAAATTCGCC
GTTGGTTCAAGCCTGAAGCAAAATTTATTGAGCCTGCACTTGTGTGGTCACAAAAAGAGGGAAATCATTTAGTGAATTAT
TTTTCCCCTTTTTATCCCTTTTTGTTGAAACAGACCGCAAGTTTTCCGCCACTATTATTTGTAAAAGGAAATTTAACCGC
ACTTTCACAACGCCAAATGGCAATGGTTGGAAGCCGTTATTGCACGACTTACGGAGAATATTGGGCAAAACATTTTGCGA
CAGAACTTTCATTAGCTGGCTTTACGATTACTAGTGGACTTGCATTAGGAATTGATGGACATTGCCATCAAGCTGTCGTC
AATATTCAAGGACAAACTATTGCGGTTTTAGGCAGTGGATTAGAACAAATCTATCCCTCTAAACATCAAAGATTATCGGC
ACAAATCATCGAAAATAATGGCGCATTAGTCTCTGAGTTCTTACCAAACCAAGCCCCCATTGCCGCTAATTTCCCACGTC
GTAATCGGATTATTAGCGGGCTTTCAGTCGGCACGCTTGTTGTTGAAGCCACAGAAAAAAGCGGGTCGCTTATTACTGCG
CGATATGCGTTGGAACAAAACCGAGAGGTTTTTGCTGTGCCGGGAAATATTCAAAATGAATCAAGTCAAGGTTGTCATCG
CCTAATTAAACAAGGTGCAATGTTAGTAGAAAATGCTAAAGATATTTTGGAAACCCTCTACCAACATTCTATCCATAGCC
AAACTGAAATCGATTTTGACCAGATCGCCGTGCCTAATTACACGCCACCACCTGATCCTCGTCGATTAGTAGAAGCACCA
AGCCACCCGAAACTTTATTCACGTATTGGTTACACGCCTGTGAGCATTGATGATTTAGCGGAAGAATTTAATTTAAGCGT
CGATGTTTTGCTTGTTCAGTTGCTCGATCTTGAGTTGCAAGATCTCATCATGAGTGAAAATGGGTTATATAAACGCGTTT
AG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Haemophilus influenzae Rd KW20

99.464

100

0.995

  dprA Glaesserella parasuis strain SC1401

52.011

93.298

0.485

  dprA Vibrio campbellii strain DS40M4

43.617

100

0.44

  dprA Vibrio cholerae strain A1552

43.288

97.855

0.424

  dprA Legionella pneumophila strain ERS1305867

40.346

93.029

0.375