Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   Q7616_RS10215 Genome accession   NZ_CP131717
Coordinates   2008688..2009032 (-) Length   114 a.a.
NCBI ID   WP_342120174.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2016N21-284     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2003688..2014032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7616_RS10190 (Q7616_10175) otnI 2004155..2004931 (-) 777 WP_342120168.1 2-oxo-tetronate isomerase -
  Q7616_RS10195 (Q7616_10180) otnC 2004934..2005566 (-) 633 WP_005665968.1 3-oxo-tetronate 4-phosphate decarboxylase -
  Q7616_RS10200 (Q7616_10185) otnK 2005563..2006804 (-) 1242 WP_221267322.1 3-oxo-tetronate kinase -
  Q7616_RS10205 (Q7616_10190) ltnD 2006807..2007712 (-) 906 WP_342120170.1 L-threonate dehydrogenase -
  Q7616_RS10210 (Q7616_10195) - 2007883..2008641 (+) 759 WP_342120172.1 DeoR/GlpR family DNA-binding transcription regulator -
  Q7616_RS10215 (Q7616_10200) comE1/comEA 2008688..2009032 (-) 345 WP_342120174.1 helix-hairpin-helix domain-containing protein Machinery gene
  Q7616_RS10220 (Q7616_10205) ispH 2009201..2010145 (-) 945 WP_014550967.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  Q7616_RS10225 (Q7616_10210) lspA 2010142..2010657 (-) 516 WP_014550968.1 signal peptidase II -
  Q7616_RS10230 (Q7616_10215) - 2010727..2012286 (-) 1560 WP_342120176.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12236.04 Da        Isoelectric Point: 8.0085

>NTDB_id=864627 Q7616_RS10215 WP_342120174.1 2008688..2009032(-) (comE1/comEA) [Haemophilus influenzae strain 2016N21-284]
MKLMKTLFTSVVLCGALVASSSFAEEKATEQTAQPVVAQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGTKKAEAIVQ
YREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 345 bp        

>NTDB_id=864627 Q7616_RS10215 WP_342120174.1 2008688..2009032(-) (comE1/comEA) [Haemophilus influenzae strain 2016N21-284]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGTGCGCTGGTTGCTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAACCTGTTGTAGCACAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAATTGA
ATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTACGAAAAAAGCGGAAGCTATTGTGCAA
TATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGAGAA
AAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(51-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

93.75

98.246

0.921
  comEA/comE1 Glaesserella parasuis strain SC1401

59.13

100

0.596
  comEA Vibrio campbellii strain DS40M4

41.441

97.368

0.404
  comEA Acinetobacter baumannii strain A118

32.061

100

0.368