Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   Q7621_RS10855 Genome accession   NZ_CP131712
Coordinates   2174050..2174712 (-) Length   220 a.a.
NCBI ID   WP_341966602.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 2008C09-280     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2169050..2179712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7621_RS10830 (Q7621_10815) - 2169200..2169466 (-) 267 WP_001278167.1 Veg family protein -
  Q7621_RS10835 (Q7621_10820) dnaB 2169468..2170820 (-) 1353 WP_000852486.1 replicative DNA helicase -
  Q7621_RS10840 (Q7621_10825) rplI 2170864..2171316 (-) 453 WP_000864220.1 50S ribosomal protein L9 -
  Q7621_RS10845 (Q7621_10830) - 2171313..2173286 (-) 1974 WP_000715123.1 DHH family phosphoesterase -
  Q7621_RS10850 (Q7621_10835) raiA 2173422..2173970 (-) 549 WP_000599107.1 ribosome-associated translation inhibitor RaiA -
  Q7621_RS10855 (Q7621_10840) comFC/cflB 2174050..2174712 (-) 663 WP_341966602.1 ComF family protein Machinery gene
  Q7621_RS10860 (Q7621_10845) comFA/cflA 2174709..2176007 (-) 1299 WP_000867608.1 DEAD/DEAH box helicase Machinery gene
  Q7621_RS10865 (Q7621_10850) - 2176063..2176698 (+) 636 WP_000395739.1 YigZ family protein -
  Q7621_RS10870 (Q7621_10855) cysK 2176983..2177903 (+) 921 WP_000029866.1 cysteine synthase A -
  Q7621_RS10875 (Q7621_10860) - 2177978..2178507 (-) 530 Protein_2104 transposase -
  Q7621_RS10880 (Q7621_10865) - 2178489..2178797 (+) 309 Protein_2105 transposase -
  Q7621_RS10885 (Q7621_10870) tnpB 2178952..2179275 (-) 324 WP_000973408.1 IS66 family insertion sequence element accessory protein TnpB -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25199.06 Da        Isoelectric Point: 7.3686

>NTDB_id=864311 Q7621_RS10855 WP_341966602.1 2174050..2174712(-) (comFC/cflB) [Streptococcus pneumoniae strain 2008C09-280]
MKCLLCGQTMKTVLTFSSLLLLRNDDSCLCSDCDSTFERIGEENCPNCMKTELSTKCQDCQLWCKEGVGVSHRAIFTYNQ
AMKDFFSWYKFDGDFLLRKVFASFLSEELKKYKEYQFVVIPLSPDRYANRGFNQVEGLVEAAGFEYLDLLEKREERASSS
KNRSERLGTELPFFIKSGVTIPKKILLIDDIYTTGATINRVKKLLEEAGAKDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=864311 Q7621_RS10855 WP_341966602.1 2174050..2174712(-) (comFC/cflB) [Streptococcus pneumoniae strain 2008C09-280]
ATGAAGTGCTTGTTATGTGGGCAGACTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAGGAATGATGACTC
TTGTCTTTGTTCAGACTGTGATTCTACTTTTGAAAGAATTGGGGAAGAGAACTGTCCAAATTGTATGAAAACAGAGTTGT
CAACAAAGTGTCAAGATTGTCAACTTTGGTGTAAAGAAGGAGTTGGAGTCAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTTGGTATAAGTTTGATGGAGACTTCCTGTTAAGAAAAGTTTTCGCTTCATTTTTAAGTGA
GGAGTTGAAAAAGTACAAAGAGTATCAATTTGTTGTAATTCCCCTAAGTCCTGATAGATATGCTAATAGAGGATTTAATC
AGGTTGAGGGCTTGGTAGAGGCAGCAGGCTTTGAGTATCTGGATTTATTAGAGAAAAGAGAAGAGAGAGCCAGTTCTTCT
AAAAATCGTTCAGAGCGCTTGGGGACAGAACTTCCTTTCTTTATTAAAAGTGGAGTCACTATTCCTAAAAAAATCCTACT
TATAGATGATATCTATACTACAGGAGCAACTATAAATCGTGTTAAGAAACTGTTGGAAGAAGCTGGTGCTAAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(153-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae D39

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae R6

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae TIGR4

99.091

100

0.991
  comFC/cflB Streptococcus mitis NCTC 12261

90.909

100

0.909
  comFC/cflB Streptococcus mitis SK321

90.455

100

0.905