Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   WHL49_RS14060 Genome accession   NZ_CP148103
Coordinates   2703210..2703905 (-) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS361     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2698210..2708905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL49_RS14035 minD 2699146..2699952 (-) 807 WP_004398624.1 septum site-determining protein MinD -
  WHL49_RS14040 minC 2699954..2700634 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  WHL49_RS14045 mreD 2700687..2701205 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  WHL49_RS14050 mreC 2701202..2702074 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  WHL49_RS14055 mreB 2702105..2703118 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  WHL49_RS14060 ysxA/radC 2703210..2703905 (-) 696 WP_003246034.1 DNA repair protein RadC Machinery gene
  WHL49_RS14065 maf 2703942..2704511 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  WHL49_RS14070 spoIIB 2704664..2705662 (-) 999 WP_004398782.1 stage II sporulation protein SpoIIB -
  WHL49_RS14075 comC 2705796..2706542 (-) 747 WP_010886586.1 A24 family peptidase Machinery gene
  WHL49_RS14080 folC 2706682..2707974 (-) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=864094 WHL49_RS14060 WP_003246034.1 2703210..2703905(-) (ysxA/radC) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=864094 WHL49_RS14060 WP_003246034.1 2703210..2703905(-) (ysxA/radC) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGGGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424