Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   WHL49_RS13900 Genome accession   NZ_CP148103
Coordinates   2677535..2678140 (-) Length   201 a.a.
NCBI ID   WP_003229717.1    Uniprot ID   O05392
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS361     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2672535..2683140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL49_RS13870 - 2673348..2673737 (+) 390 WP_004398667.1 TIGR04086 family membrane protein -
  WHL49_RS13875 yajC 2673794..2674060 (-) 267 WP_004398708.1 preprotein translocase subunit YajC -
  WHL49_RS13880 tgt 2674097..2675242 (-) 1146 WP_003229725.1 tRNA guanosine(34) transglycosylase Tgt -
  WHL49_RS13885 queA 2675269..2676297 (-) 1029 WP_003229723.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  WHL49_RS13890 yrzS 2676327..2676527 (-) 201 WP_003222669.1 DUF2905 domain-containing protein -
  WHL49_RS13895 ruvB 2676520..2677524 (-) 1005 WP_003229718.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  WHL49_RS13900 ruvA 2677535..2678140 (-) 606 WP_003229717.1 Holliday junction branch migration protein RuvA Machinery gene
  WHL49_RS13905 bofC 2678279..2678791 (-) 513 WP_003229715.1 sporulation cell-cell signaling protein BofC -
  WHL49_RS13910 csbX 2678839..2680146 (-) 1308 WP_003246197.1 MFS transporter -
  WHL49_RS13915 iolG 2680217..2681242 (-) 1026 WP_004398990.1 inositol 2-dehydrogenase -
  WHL49_RS13920 yrzF 2681480..2682127 (+) 648 WP_003246159.1 phosphotransferase -
  WHL49_RS13925 - 2682173..2682295 (-) 123 WP_003229707.1 hypothetical protein -
  WHL49_RS13930 yrzH 2682380..2682670 (+) 291 WP_003246047.1 DUF5412 family protein -
  WHL49_RS13935 - 2682677..2682817 (+) 141 WP_004398683.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22584.08 Da        Isoelectric Point: 5.4072

>NTDB_id=864093 WHL49_RS13900 WP_003229717.1 2677535..2678140(-) (ruvA) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIYKERSQETIFTYHHIREDAFSLYGFSTREEKALFTKLLNVTGIGP
KGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIENLFNHEERLEKQTAETALEEAL
EALRVLGYAEKEIKKVLPHLKEEIGLTTDQYVKKALQKLLK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=864093 WHL49_RS13900 WP_003229717.1 2677535..2678140(-) (ruvA) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
GTGATTGAATTTGTTAAAGGGACGATTGATTATGTATCTCCCCAATATATTGTCATAGAGAACGGCGGCATCGGCTATCA
GATTTTCACGCCGAATCCGTTTATATATAAGGAGAGAAGCCAAGAAACGATTTTTACATACCATCATATCAGAGAGGATG
CTTTTTCGCTTTATGGTTTTTCAACAAGAGAGGAGAAGGCGCTCTTTACAAAGCTGTTAAACGTGACCGGAATTGGCCCG
AAAGGAGCACTTGCCATCTTGGGCTCGGGTGATCCCGGAGCGGTCATCCAAGCAATTGAAAATGAAGATGAAGCTTTTTT
GGTCAAGTTTCCTGGAGTAGGAAAGAAAACCGCACGCCAGATTATTCTAGATTTAAAAGGAAAGCTGGCAGATGTTGTGC
CTGAAATGATTGAAAATCTGTTTAATCATGAAGAAAGGCTTGAAAAGCAAACAGCGGAAACGGCTCTTGAAGAAGCACTT
GAAGCCCTCAGGGTTCTCGGATATGCTGAAAAAGAAATCAAAAAGGTGCTTCCTCACCTTAAAGAAGAAATTGGGCTGAC
AACAGACCAATATGTGAAAAAAGCATTACAAAAACTATTAAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(155-199)

RuvA N terminal domain (RuvA_N)

(1-59)

Helix-hairpin-helix domain (HHH_5)

(69-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O05392

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ruvA Streptococcus pneumoniae TIGR4

39.806

100

0.408
  ruvA Streptococcus pneumoniae R6

39.806

100

0.408
  ruvA Streptococcus pneumoniae D39

39.806

100

0.408