Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   WHL49_RS13895 Genome accession   NZ_CP148103
Coordinates   2676520..2677524 (-) Length   334 a.a.
NCBI ID   WP_003229718.1    Uniprot ID   O32055
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS361     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2671520..2682524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL49_RS13865 yrbG 2672494..2673150 (-) 657 WP_004398801.1 DUF421 domain-containing protein -
  WHL49_RS13870 - 2673348..2673737 (+) 390 WP_004398667.1 TIGR04086 family membrane protein -
  WHL49_RS13875 yajC 2673794..2674060 (-) 267 WP_004398708.1 preprotein translocase subunit YajC -
  WHL49_RS13880 tgt 2674097..2675242 (-) 1146 WP_003229725.1 tRNA guanosine(34) transglycosylase Tgt -
  WHL49_RS13885 queA 2675269..2676297 (-) 1029 WP_003229723.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  WHL49_RS13890 yrzS 2676327..2676527 (-) 201 WP_003222669.1 DUF2905 domain-containing protein -
  WHL49_RS13895 ruvB 2676520..2677524 (-) 1005 WP_003229718.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  WHL49_RS13900 ruvA 2677535..2678140 (-) 606 WP_003229717.1 Holliday junction branch migration protein RuvA Machinery gene
  WHL49_RS13905 bofC 2678279..2678791 (-) 513 WP_003229715.1 sporulation cell-cell signaling protein BofC -
  WHL49_RS13910 csbX 2678839..2680146 (-) 1308 WP_003246197.1 MFS transporter -
  WHL49_RS13915 iolG 2680217..2681242 (-) 1026 WP_004398990.1 inositol 2-dehydrogenase -
  WHL49_RS13920 yrzF 2681480..2682127 (+) 648 WP_003246159.1 phosphotransferase -
  WHL49_RS13925 - 2682173..2682295 (-) 123 WP_003229707.1 hypothetical protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37467.78 Da        Isoelectric Point: 5.1631

>NTDB_id=864092 WHL49_RS13895 WP_003229718.1 2676520..2677524(-) (ruvB) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
MDERLVSSEADNHESVIEQSLRPQNLAQYIGQHKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
LRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLHRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVMSRLEYYTQEELADIVTRTADVFEVEIDKPSALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEDISQNALERLQVDRLGLDHIDHKLLMGMIEKFNGGPVGLDTISATIGEESHTIEDVYEPYLLQIGFIQRTPRGRIVTP
AVYHHFQMEAPRYD

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=864092 WHL49_RS13895 WP_003229718.1 2676520..2677524(-) (ruvB) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
ATGGATGAACGGCTCGTCTCAAGTGAAGCAGACAACCATGAATCAGTGATAGAGCAAAGCCTGAGGCCGCAAAATCTGGC
ACAGTATATCGGGCAGCATAAGGTAAAAGAAAATTTGCGCGTGTTTATAGATGCGGCGAAAATGAGACAGGAGACGCTGG
ATCATGTTCTTCTGTACGGGCCGCCCGGACTCGGAAAAACAACGCTTGCTTCGATTGTTGCTAATGAAATGGGAGTGGAA
TTGCGGACGACATCAGGGCCTGCGATTGAAAGGCCTGGTGATTTGGCTGCTATATTAACGGCGCTGGAACCGGGAGATGT
ATTATTTATTGATGAAATACATAGGCTGCACAGATCGATCGAAGAGGTGCTTTATCCTGCAATGGAAGACTTTTGCCTGG
ACATTGTGATTGGCAAAGGCCCATCTGCCCGCTCGGTTCGCCTCGACCTTCCGCCTTTTACGCTGGTGGGAGCCACGACG
AGGGTGGGGCTTTTGACGGCTCCTTTAAGAGACAGATTCGGCGTAATGTCTCGCCTTGAGTACTATACACAAGAAGAACT
GGCGGATATTGTCACAAGAACCGCTGATGTATTCGAGGTTGAGATTGATAAACCGTCGGCTCTTGAAATTGCAAGAAGAT
CGAGAGGGACGCCCCGCGTGGCGAACCGCCTGCTGAGAAGGGTGCGCGATTTCGCCCAAGTGCTGGGTGACAGCAGGATT
ACGGAAGACATTTCTCAGAATGCGCTGGAGCGGCTTCAGGTTGACCGCCTCGGTTTGGATCATATTGATCATAAGCTGCT
GATGGGCATGATCGAAAAATTCAACGGCGGCCCAGTAGGCCTTGATACGATTTCAGCTACCATCGGCGAGGAATCGCATA
CGATTGAAGACGTATATGAACCATATCTGCTGCAAATTGGATTTATACAAAGAACGCCGCGTGGAAGGATCGTGACACCG
GCCGTTTATCATCATTTCCAAATGGAGGCTCCCCGATATGACTGA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(182-255)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O32055

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ruvB Streptococcus pneumoniae TIGR4

60.429

97.605

0.59
  ruvB Streptococcus pneumoniae R6

60.429

97.605

0.59
  ruvB Streptococcus pneumoniae D39

60.429

97.605

0.59
  ruvB Synechocystis sp. PCC 6803

57.143

98.503

0.563
  ruvB Helicobacter pylori 26695

52.744

98.204

0.518