Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   WDR08_RS01890 Genome accession   NZ_CP148035
Coordinates   387820..389832 (-) Length   670 a.a.
NCBI ID   WP_017149200.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain S1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 382820..394832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR08_RS01875 (WDR08_01875) - 384210..385130 (-) 921 WP_003091419.1 LysR family transcriptional regulator -
  WDR08_RS01880 (WDR08_01880) - 385233..386267 (+) 1035 WP_003104593.1 HlyD family secretion protein -
  WDR08_RS01885 (WDR08_01885) - 386317..387816 (+) 1500 WP_074231436.1 MDR family MFS transporter -
  WDR08_RS01890 (WDR08_01890) uvrB 387820..389832 (-) 2013 WP_017149200.1 excinuclease ABC subunit UvrB Machinery gene
  WDR08_RS01895 (WDR08_01895) - 390020..391216 (+) 1197 WP_031755715.1 amino acid aminotransferase -
  WDR08_RS01905 (WDR08_01905) comEA/comE1 391433..391762 (-) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  WDR08_RS01910 (WDR08_01910) - 391953..393950 (-) 1998 WP_023088173.1 nucleoside-diphosphate sugar epimerase/dehydratase -

Sequence

Protein


Download         Length: 670 a.a.        Molecular weight: 76053.33 Da        Isoelectric Point: 5.1461

>NTDB_id=863710 WDR08_RS01890 WP_017149200.1 387820..389832(-) (uvrB) [Pseudomonas aeruginosa strain S1]
MDTFQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLAPNKTLAAQLYGEFKTFF
PHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRLSATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHL
DRGDRIDQRELLRRLTSLQYTRNDMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF
TFYPKSHYVTPRETLLEAVDQIKAELKERLDYLRNSNKLVEAQRLEQRTRFDLEMILELGYCNGIENYSRYLSGRAPGEP
PPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETLVEYGFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEA
EHAGRIIEQVVRPTGLVDPEIEVRPAMTQVDDLLSQIRQRVAKDERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDIDT
VERVEIIRDLRAGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGKAILYADNVTGSMQ
RAIDETERRRAKQIAFNQAHGIVPKGVRKDIKDILEGAVVPGARGKRKGVAKVAEESGRYENELRSPSEISKRIRQLEEK
MYQLARDLEFEAAAQLRDEIQTLRERLVNV

Nucleotide


Download         Length: 2013 bp        

>NTDB_id=863710 WDR08_RS01890 WP_017149200.1 387820..389832(-) (uvrB) [Pseudomonas aeruginosa strain S1]
ATGGATACGTTCCAACTCGACTCGCGCTTCAAGCCCGCCGGCGACCAGCCGGAAGCCATCCGGCAGATGGTCGAGGGGCT
GGAGGCGGGGCTTTCGCACCAGACCCTGTTGGGGGTGACGGGCTCTGGCAAGACTTTCAGCATCGCCAACGTGATTGCCC
AGGTGCAGCGCCCGACCCTGGTCCTGGCGCCAAACAAGACCCTGGCGGCCCAGCTCTACGGGGAGTTCAAGACGTTCTTC
CCGCACAATTCCGTGGAGTACTTCGTTTCCTACTACGACTACTACCAGCCGGAGGCCTACGTACCGTCTTCCGATACCTA
TATCGAGAAGGACTCCTCGATCAACGACCATATCGAGCAGATGCGCCTGTCGGCGACCAAGGCGCTGCTCGAGCGTCCGG
ATGCGATCATCGTCGCCACCGTGTCGTCCATCTACGGCCTCGGTGATCCCGCGTCCTACCTGAAGATGGTCCTGCACCTG
GACCGCGGCGACCGCATCGACCAGCGCGAACTGCTGCGGCGACTGACCAGCCTGCAGTACACCCGCAACGACATGGATTT
CGCCCGTGCGACTTTCCGTGTGCGTGGCGATGTGATCGACATCTTCCCGGCCGAATCCGATCTCGAGGCGATTCGTGTCG
AGTTGTTCGACGACGAGGTGGAAAGCCTCTCGGCCTTCGATCCGCTCACCGGCGAGGTGATCCGCAAGCTGCCGCGCTTC
ACCTTCTACCCCAAGAGCCACTACGTGACTCCGCGCGAGACGCTGCTGGAGGCGGTCGACCAGATCAAGGCCGAACTCAA
GGAACGCCTGGACTACCTGCGCAACAGCAACAAGCTGGTGGAAGCGCAGCGCCTGGAGCAGCGCACCCGTTTCGACCTGG
AGATGATCCTCGAACTGGGCTACTGCAACGGCATCGAGAACTACTCGCGCTATCTTTCCGGGCGGGCCCCCGGCGAGCCG
CCGCCGACGCTCTACGACTACCTGCCGGCCAACTCGCTGCTGGTTATCGACGAATCGCACGTCAGCGTTCCGCAGGTCGG
TGCGATGTTCAAGGGCGACCGCTCGCGCAAGGAGACCCTGGTGGAATACGGTTTCCGCCTGCCTTCGGCGCTGGACAACC
GGCCGCTGCGCTTCGAAGAGTGGGAGGCGGTGAGTCCGCAGACCATCTTCGTCTCCGCCACCCCGGGCCCCTACGAGGCG
GAACATGCCGGGCGGATCATCGAGCAGGTGGTGCGTCCCACCGGGCTGGTCGATCCGGAGATCGAGGTACGCCCGGCGAT
GACCCAGGTGGATGACCTGCTCTCGCAGATCCGCCAGCGGGTGGCCAAGGACGAGCGGGTGCTGGTGACTACCCTGACCA
AGCGCATGGCCGAGGACCTCACCGATTATCTCGGCGATCACGACGTGCGGGTGCGCTACCTGCACTCGGACATCGATACC
GTCGAGCGAGTGGAGATCATCCGCGACCTGCGCGCCGGTGCGTTCGACGTGCTGGTGGGGATCAACCTGCTGCGCGAAGG
CCTGGACATGCCCGAGGTGTCGCTGGTGGCGATCCTCGACGCGGACAAGGAAGGCTTCCTGCGCTCGGAGCGCTCGCTGA
TCCAGACCATCGGTCGTGCCGCGCGCAACCTGCACGGCAAGGCGATCCTCTACGCCGACAACGTCACCGGCTCGATGCAG
CGTGCGATCGACGAGACCGAGCGGCGTCGGGCCAAGCAGATCGCGTTCAACCAAGCCCATGGCATCGTGCCCAAGGGGGT
GCGCAAGGATATCAAGGACATTCTCGAAGGCGCCGTGGTGCCCGGCGCGCGCGGCAAGCGCAAGGGCGTGGCCAAGGTGG
CGGAGGAGAGCGGGCGCTACGAGAACGAACTGCGCTCGCCGAGCGAGATCAGCAAGCGCATCCGCCAACTGGAGGAAAAG
ATGTACCAGTTGGCCCGCGACCTGGAGTTCGAGGCGGCGGCGCAACTGCGCGACGAGATCCAGACGCTGCGCGAGCGCCT
GGTCAACGTCTGA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(11-118)

UvrB/uvrC motif (UVR)

(632-665)

UvrB interaction domain (UvrB_inter)

(158-248)

Ultra-violet resistance protein B (UvrB)

(550-592)

Helicase conserved C-terminal domain (Helicase_C)

(435-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.534

98.06

0.564
  uvrB Streptococcus pneumoniae R6

57.534

98.06

0.564
  uvrB Streptococcus pneumoniae D39

57.534

98.06

0.564