Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   WDR08_RS01905 Genome accession   NZ_CP148035
Coordinates   391433..391762 (-) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain S1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 386433..396762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR08_RS01890 (WDR08_01890) uvrB 387820..389832 (-) 2013 WP_017149200.1 excinuclease ABC subunit UvrB Machinery gene
  WDR08_RS01895 (WDR08_01895) - 390020..391216 (+) 1197 WP_031755715.1 amino acid aminotransferase -
  WDR08_RS01905 (WDR08_01905) comEA/comE1 391433..391762 (-) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  WDR08_RS01910 (WDR08_01910) - 391953..393950 (-) 1998 WP_023088173.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  WDR08_RS01915 (WDR08_01915) - 393985..395004 (-) 1020 WP_003158833.1 glycosyltransferase family 4 protein -
  WDR08_RS01920 (WDR08_01920) - 395006..395962 (-) 957 WP_338859269.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=863711 WDR08_RS01905 WP_003091430.1 391433..391762(-) (comEA/comE1) [Pseudomonas aeruginosa strain S1]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=863711 WDR08_RS01905 WP_003091430.1 391433..391762(-) (comEA/comE1) [Pseudomonas aeruginosa strain S1]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385