Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WAC27_RS10625 Genome accession   NZ_CP148034
Coordinates   2185388..2185924 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain NH-21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2180388..2190924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAC27_RS10605 (WAC27_10605) aphA 2180751..2181389 (+) 639 Protein_2055 acid phosphatase AphA -
  WAC27_RS10610 (WAC27_10610) yjbQ 2181500..2181916 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  WAC27_RS10615 (WAC27_10615) yjbR 2181920..2182276 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  WAC27_RS10620 (WAC27_10620) uvrA 2182311..2185133 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  WAC27_RS10625 (WAC27_10625) ssb 2185388..2185924 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  WAC27_RS10630 (WAC27_10630) yjcB 2186023..2186304 (-) 282 WP_001295689.1 YjcB family protein -
  WAC27_RS10635 (WAC27_10635) - 2186855..2187552 (+) 698 WP_223429336.1 IS1 family transposase -
  WAC27_RS10640 (WAC27_10640) pdeC 2187568..2189097 (+) 1530 Protein_2062 c-di-GMP phosphodiesterase PdeC -
  WAC27_RS10645 (WAC27_10645) soxS 2189100..2189423 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  WAC27_RS10650 (WAC27_10650) soxR 2189509..2189973 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=863672 WAC27_RS10625 WP_000168305.1 2185388..2185924(+) (ssb) [Escherichia coli strain NH-21]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=863672 WAC27_RS10625 WP_000168305.1 2185388..2185924(+) (ssb) [Escherichia coli strain NH-21]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489