Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   WFE12_RS15230 Genome accession   NZ_CP147877
Coordinates   2863251..2863946 (-) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2858251..2868946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WFE12_RS15205 minD 2859187..2859993 (-) 807 WP_004398624.1 septum site-determining protein MinD -
  WFE12_RS15210 minC 2859995..2860675 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  WFE12_RS15215 mreD 2860728..2861246 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  WFE12_RS15220 mreC 2861243..2862115 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  WFE12_RS15225 mreB 2862146..2863159 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  WFE12_RS15230 ysxA/radC 2863251..2863946 (-) 696 WP_003246034.1 DNA repair protein RadC Machinery gene
  WFE12_RS15235 maf 2863983..2864552 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  WFE12_RS15240 spoIIB 2864705..2865703 (-) 999 WP_004398782.1 stage II sporulation protein SpoIIB -
  WFE12_RS15245 comC 2865837..2866583 (-) 747 WP_010886586.1 A24 family peptidase Machinery gene
  WFE12_RS15250 folC 2866723..2868015 (-) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=863329 WFE12_RS15230 WP_003246034.1 2863251..2863946(-) (ysxA/radC) [Bacillus subtilis subsp. subtilis str. 168]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=863329 WFE12_RS15230 WP_003246034.1 2863251..2863946(-) (ysxA/radC) [Bacillus subtilis subsp. subtilis str. 168]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGGGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424