Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KI216_RS15175 Genome accession   NZ_AP024595
Coordinates   3213848..3214438 (-) Length   196 a.a.
NCBI ID   WP_005006829.1    Uniprot ID   N9CEK8
Organism   Acinetobacter bouvetii strain JCM 18991     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3208848..3219438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI216_RS15145 (ACBO_29300) ycaC 3209166..3209792 (+) 627 WP_026253441.1 isochorismate family cysteine hydrolase YcaC -
  KI216_RS15150 (ACBO_29310) - 3209894..3210817 (+) 924 WP_005006841.1 LysR substrate-binding domain-containing protein -
  KI216_RS15155 (ACBO_29320) ahpC 3210948..3211511 (-) 564 WP_005006836.1 alkyl hydroperoxide reductase subunit C -
  KI216_RS15160 (ACBO_29330) - 3211707..3212378 (-) 672 WP_005006834.1 TetR/AcrR family transcriptional regulator -
  KI216_RS15165 (ACBO_29340) - 3212485..3212949 (+) 465 WP_005006832.1 hotdog fold domain-containing protein -
  KI216_RS15170 (ACBO_29350) - 3213304..3213726 (-) 423 WP_005006830.1 hypothetical protein -
  KI216_RS15175 (ACBO_29360) ssb 3213848..3214438 (-) 591 WP_005006829.1 single-stranded DNA-binding protein Machinery gene
  KI216_RS15180 (ACBO_29370) - 3214490..3215854 (-) 1365 WP_005006827.1 MFS transporter -
  KI216_RS15185 (ACBO_29380) - 3216005..3217090 (-) 1086 WP_005006825.1 DUF475 domain-containing protein -
  KI216_RS15190 (ACBO_29390) - 3217384..3218103 (-) 720 WP_018573022.1 hypothetical protein -
  KI216_RS15195 (ACBO_29400) - 3218262..3218597 (-) 336 WP_005006822.1 GlpM family protein -
  KI216_RS15200 (ACBO_29410) - 3218689..3219066 (-) 378 WP_005006819.1 hypothetical protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21431.09 Da        Isoelectric Point: 6.4829

>NTDB_id=86321 KI216_RS15175 WP_005006829.1 3213848..3214438(-) (ssb) [Acinetobacter bouvetii strain JCM 18991]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSSRPQGEQGQGFEQPRFNNNNGQQGGYNNNQSGGYGNQGGNSQSGYGNQGG
NNQSNGYANNNPSGFAPKAPAAPAAAPADLDDDLPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=86321 KI216_RS15175 WP_005006829.1 3213848..3214438(-) (ssb) [Acinetobacter bouvetii strain JCM 18991]
ATGCGCGGTGTAAATAAAGTTATTTTAGTCGGTACATTAGGCCGAGATCCAGAAACAAAAACTTTCCCGAACGGCGGTTC
GCTGACTCAGTTCTCGATCGCAACCAGCGATTCTTGGACAGATAAAAGTACAGGTGAGCGTAAAGAGCAGACCGAATGGC
ACCGTATTGTGCTGCATAACCGCTTAGGTGAAATTGCGCAGCAATACCTGCGCAAAGGCTCTAAAGTATACATTGAAGGT
TCTTTGCGCACCCGCCAATGGACCGACCAAAACGGTCAAGAGCGCTACACCACCGAAATCCGCGGTGAACAGATGCAGAT
GCTGGACAGCAGCCGCCCGCAAGGTGAGCAAGGCCAAGGCTTTGAGCAGCCGCGTTTTAACAATAACAATGGCCAGCAAG
GCGGTTATAACAATAACCAGTCTGGCGGTTATGGCAATCAGGGCGGCAATAGCCAAAGCGGTTATGGCAATCAAGGCGGC
AATAATCAGAGCAATGGCTATGCCAACAACAACCCGAGCGGTTTTGCGCCTAAAGCTCCAGCAGCGCCAGCGGCTGCTCC
AGCAGATTTGGATGATGACCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9CEK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.515

100

0.52
  ssb Vibrio cholerae strain A1552

42.289

100

0.434
  ssb Neisseria gonorrhoeae MS11

41

100

0.418
  ssb Neisseria meningitidis MC58

41.206

100

0.418

Multiple sequence alignment