Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilI   Type   Machinery gene
Locus tag   Q7645_RS02690 Genome accession   NZ_CP131641
Coordinates   520892..521500 (+) Length   202 a.a.
NCBI ID   WP_235270336.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2010C02-038     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 515892..526500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7645_RS02665 (Q7645_02665) - 516335..516667 (+) 333 WP_003687908.1 hypothetical protein -
  Q7645_RS02670 (Q7645_02670) - 516998..517507 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  Q7645_RS02675 (Q7645_02675) - 517737..518317 (-) 581 Protein_517 superoxide dismutase -
  Q7645_RS02680 (Q7645_02680) dnaB 518481..519887 (+) 1407 WP_003704337.1 replicative DNA helicase -
  Q7645_RS02685 (Q7645_02685) pilH 520195..520860 (+) 666 WP_341966480.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q7645_RS02690 (Q7645_02690) pilI 520892..521500 (+) 609 WP_235270336.1 type IV pilus modification protein PilV Machinery gene
  Q7645_RS02695 (Q7645_02695) pilJ 521497..522465 (+) 969 WP_235270335.1 PilW family protein Machinery gene
  Q7645_RS02700 (Q7645_02700) pilK 522444..523055 (+) 612 WP_010359922.1 pilus assembly protein Machinery gene
  Q7645_RS02705 (Q7645_02705) pilL 523057..523530 (+) 474 WP_025455985.1 PilX family type IV pilin Machinery gene
  Q7645_RS02710 (Q7645_02710) - 523600..523908 (-) 309 WP_010359926.1 AzlD family protein -
  Q7645_RS02715 (Q7645_02715) - 523905..524615 (-) 711 Protein_525 AzlC family ABC transporter permease -
  Q7645_RS02720 (Q7645_02720) dut 524781..525233 (+) 453 WP_010359930.1 dUTP diphosphatase -
  Q7645_RS02725 (Q7645_02725) dapC 525311..526498 (+) 1188 WP_235270334.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21881.68 Da        Isoelectric Point: 4.6984

>NTDB_id=863165 Q7645_RS02690 WP_235270336.1 520892..521500(+) (pilI) [Neisseria gonorrhoeae strain 2010C02-038]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYTESYTSTSSDGDFALDKLKSKKDLAKAQLDRFGYELKNALPDAVAIHYDVCKDSSGGAPTLSGGAFSSNCDNKANG
DTLIKVLWVNDSAGDSDISRTNLEVSGDNIVYTYQARVGGRE

Nucleotide


Download         Length: 609 bp        

>NTDB_id=863165 Q7645_RS02690 WP_235270336.1 520892..521500(+) (pilI) [Neisseria gonorrhoeae strain 2010C02-038]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGTTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTACAGTTGCGGACAGTCGCTTCCGTCAGGGAGGCGGAGACACAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACACTGAGTCGTACACCTCCACTTCTTCTGACGGCGATTTTGCACTTGATAAGCTTAAAAGCAAGAAGGA
TTTGGCAAAGGCCCAGTTGGACAGGTTCGGTTATGAATTGAAAAATGCCTTGCCGGATGCGGTAGCTATTCATTACGACG
TCTGCAAGGATTCGTCGGGTGGCGCGCCGACATTGTCCGGCGGTGCTTTTTCTTCAAATTGCGACAATAAGGCAAACGGG
GATACTTTAATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGAGGTGAGCGG
CGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGTGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilI Neisseria gonorrhoeae MS11

91.089

100

0.911
  pilV Neisseria gonorrhoeae MS11

91.089

100

0.911
  pilV Neisseria meningitidis 8013

87.864

100

0.896