Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   Q7645_RS02700 Genome accession   NZ_CP131641
Coordinates   522444..523055 (+) Length   203 a.a.
NCBI ID   WP_010359922.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2010C02-038     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 517444..528055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7645_RS02675 (Q7645_02675) - 517737..518317 (-) 581 Protein_517 superoxide dismutase -
  Q7645_RS02680 (Q7645_02680) dnaB 518481..519887 (+) 1407 WP_003704337.1 replicative DNA helicase -
  Q7645_RS02685 (Q7645_02685) pilH 520195..520860 (+) 666 WP_341966480.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q7645_RS02690 (Q7645_02690) pilI 520892..521500 (+) 609 WP_235270336.1 type IV pilus modification protein PilV Machinery gene
  Q7645_RS02695 (Q7645_02695) pilJ 521497..522465 (+) 969 WP_235270335.1 PilW family protein Machinery gene
  Q7645_RS02700 (Q7645_02700) pilK 522444..523055 (+) 612 WP_010359922.1 pilus assembly protein Machinery gene
  Q7645_RS02705 (Q7645_02705) pilL 523057..523530 (+) 474 WP_025455985.1 PilX family type IV pilin Machinery gene
  Q7645_RS02710 (Q7645_02710) - 523600..523908 (-) 309 WP_010359926.1 AzlD family protein -
  Q7645_RS02715 (Q7645_02715) - 523905..524615 (-) 711 Protein_525 AzlC family ABC transporter permease -
  Q7645_RS02720 (Q7645_02720) dut 524781..525233 (+) 453 WP_010359930.1 dUTP diphosphatase -
  Q7645_RS02725 (Q7645_02725) dapC 525311..526498 (+) 1188 WP_235270334.1 succinyldiaminopimelate transaminase -
  Q7645_RS02730 (Q7645_02730) yaaA 526654..527433 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22082.01 Da        Isoelectric Point: 8.0862

>NTDB_id=863167 Q7645_RS02700 WP_010359922.1 522444..523055(+) (pilK) [Neisseria gonorrhoeae strain 2010C02-038]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEAFGNIVVKGKPTVEAVKRSCPAKSGKNSTDLCIDNQGVEYNKGTAGVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=863167 Q7645_RS02700 WP_010359922.1 522444..523055(+) (pilK) [Neisseria gonorrhoeae strain 2010C02-038]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGAAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGACCTGTGCATTGACAATCAGGGAGTGGAATATAACAAAGGCACGGCAGGCGTCAGCAAAATGCCG
CGTTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

94.089

100

0.941