Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   Q7645_RS02685 Genome accession   NZ_CP131641
Coordinates   520195..520860 (+) Length   221 a.a.
NCBI ID   WP_341966480.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2010C02-038     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 515195..525860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7645_RS02660 (Q7645_02660) cysT 515325..516154 (-) 830 Protein_514 sulfate ABC transporter permease subunit CysT -
  Q7645_RS02665 (Q7645_02665) - 516335..516667 (+) 333 WP_003687908.1 hypothetical protein -
  Q7645_RS02670 (Q7645_02670) - 516998..517507 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  Q7645_RS02675 (Q7645_02675) - 517737..518317 (-) 581 Protein_517 superoxide dismutase -
  Q7645_RS02680 (Q7645_02680) dnaB 518481..519887 (+) 1407 WP_003704337.1 replicative DNA helicase -
  Q7645_RS02685 (Q7645_02685) pilH 520195..520860 (+) 666 WP_341966480.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q7645_RS02690 (Q7645_02690) pilI 520892..521500 (+) 609 WP_235270336.1 type IV pilus modification protein PilV Machinery gene
  Q7645_RS02695 (Q7645_02695) pilJ 521497..522465 (+) 969 WP_235270335.1 PilW family protein Machinery gene
  Q7645_RS02700 (Q7645_02700) pilK 522444..523055 (+) 612 WP_010359922.1 pilus assembly protein Machinery gene
  Q7645_RS02705 (Q7645_02705) pilL 523057..523530 (+) 474 WP_025455985.1 PilX family type IV pilin Machinery gene
  Q7645_RS02710 (Q7645_02710) - 523600..523908 (-) 309 WP_010359926.1 AzlD family protein -
  Q7645_RS02715 (Q7645_02715) - 523905..524615 (-) 711 Protein_525 AzlC family ABC transporter permease -
  Q7645_RS02720 (Q7645_02720) dut 524781..525233 (+) 453 WP_010359930.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24660.11 Da        Isoelectric Point: 9.6049

>NTDB_id=863164 Q7645_RS02685 WP_341966480.1 520195..520860(+) (pilH) [Neisseria gonorrhoeae strain 2010C02-038]
MCTRKQQGFTLIELLIVIAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPAQVKKDGTVD
NQCDLGKKEQGMLAFGDKNDNKAYDGDSADVFLRNVVLNDDIKDKRINYTFNHIAFGQTRSTADRVVWTFNQNGTFGYSS
DRNLKNNSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=863164 Q7645_RS02685 WP_341966480.1 520195..520860(+) (pilH) [Neisseria gonorrhoeae strain 2010C02-038]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAATAGAGCTGCTCATCGTGATAGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACGGTACGGTCGAC
AACCAATGCGACTTGGGTAAGAAGGAACAGGGGATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGTGA
TTCTGCGGATGTTTTTCTCCGTAACGTGGTATTGAATGATGATATCAAGGATAAGCGGATTAATTACACCTTCAATCATA
TCGCTTTCGGTCAAACACGGTCGACTGCCGATCGTGTTGTTTGGACTTTCAACCAAAACGGGACATTCGGCTATTCGTCC
GATCGGAATCTCAAGAATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTTGAAGTTTGTCGTAAAAACG
ATACGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

86.878

100

0.869