Detailed information NTG0862898

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: WDV79_RS08330
• Genome accession: NZ_CP147731
• Coordinates: 1675501..1676499 (+)
• Length: 332 a.a.
• NCBI ID: WP_000196634.1
• Uniprot ID: Q8E2D9
• Organism: Streptococcus agalactiae strain SagR266
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1670501..1681499

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WDV79_RS08315 (WDV79_08315)	-	1671427..1672818 (+)	1392	WP_001079802.1	hypothetical protein	-
WDV79_RS08320 (WDV79_08320)	purB	1672843..1674141 (+)	1299	WP_000572887.1	adenylosuccinate lyase	-
WDV79_RS08325 (WDV79_08325)	comR	1674293..1675204 (+)	912	WP_000912100.1	helix-turn-helix domain-containing protein	Regulator
WDV79_RS08330 (WDV79_08330)	ruvB	1675501..1676499 (+)	999	WP_000196634.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
WDV79_RS08335 (WDV79_08335)	-	1676651..1677088 (+)	438	WP_000754813.1	low molecular weight protein-tyrosine-phosphatase	-
WDV79_RS08340 (WDV79_08340)	-	1677095..1677475 (+)	381	WP_000787700.1	membrane protein	-
WDV79_RS08345 (WDV79_08345)	-	1677472..1679250 (+)	1779	WP_001220909.1	acyltransferase family protein	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37557.94 Da
• Isoelectric Point: 4.5391

>NTDB_id=862898 WDV79_RS08330 WP_000196634.1 1675501..1676499(+) (ruvB) [Streptococcus agalactiae strain SagR266]
MTRFLDSDAMGDEELVERTLRPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKSGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGAGETSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYEENDLTEIIERTADIFEMKITYEAASELARRSRGTPRIANRLLKRVRDYAQIMGDGLID
DNITDKALTMLDVDHEGLDYVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATVK
AYEHLGYQRFDK

Nucleotide

• Length: 999 bp

>NTDB_id=862898 WDV79_RS08330 WP_000196634.1 1675501..1676499(+) (ruvB) [Streptococcus agalactiae strain SagR266]
ATGACAAGATTTTTAGATAGTGATGCAATGGGTGACGAAGAATTGGTAGAACGTACACTTCGTCCGCAGTATTTAAGAGA
GTATATTGGACAAGATAAGGTTAAAGATCAGCTAAAAATATTTATTGAAGCTGCTAAATTGCGTGATGAGTCATTGGATC
ATGTGTTATTATTTGGCCCTCCTGGTTTAGGGAAAACAACCATGGCATTTGTAATTGCTAATGAGTTGGGTGTCAATCTC
AAACAAACATCAGGTCCCGCAATTGAAAAATCAGGGGATTTAGTAGCCATTTTAAATGATTTAGAACCAGGTGATGTTCT
TTTTATTGATGAAATTCATCGTATGCCGATGGCGGTTGAAGAGGTACTTTATAGTGCAATGGAAGACTTCTATATTGACA
TTATGATCGGTGCAGGAGAAACTAGTAGAAGTGTTCATCTAGATTTGCCGCCCTTTACCTTAATTGGTGCAACGACACGT
GCAGGTATGTTATCTAATCCCTTACGTGCTCGCTTTGGTATTACAGGGCATATGGAGTATTATGAAGAAAATGATTTGAC
AGAAATTATTGAGCGTACAGCAGACATTTTTGAAATGAAAATTACTTATGAAGCTGCTTCTGAATTAGCGCGTCGCAGTC
GTGGAACGCCACGTATCGCTAACCGTTTATTGAAACGTGTTCGAGATTATGCTCAAATCATGGGAGATGGTTTGATAGAT
GACAATATTACAGATAAAGCATTAACGATGTTAGATGTTGATCACGAGGGGCTTGATTACGTCGATCAAAAAATCTTAAG
AACCATGATTGAAATGTATAATGGAGGTCCTGTTGGTTTAGGAACTCTATCCGTTAATATTGCTGAAGAACGAGATACTG
TTGAAGACATGTACGAACCTTATTTAATTCAAAAAGGTTTTATTATGCGTACCCGTACCGGTCGTGTAGCTACGGTTAAG
GCATATGAACATTTAGGTTATCAGCGATTTGATAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

3D structure

• AlphaFold DB: Q8E2D9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.06	100	0.901
ruvB	Streptococcus pneumoniae R6	89.759	100	0.898
ruvB	Streptococcus pneumoniae D39	89.759	100	0.898
ruvB	Bacillus subtilis subsp. subtilis str. 168	59.819	99.699	0.596
ruvB	Helicobacter pylori 26695	53.074	93.072	0.494
ruvB	Synechocystis sp. PCC 6803	50.479	94.277	0.476