Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q5709_RS13885 Genome accession   NZ_CP131483
Coordinates   2918394..2918978 (-) Length   194 a.a.
NCBI ID   WP_005024120.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain MC-14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2913394..2923978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5709_RS13865 (Q5709_13870) katE 2913619..2915742 (+) 2124 WP_005024128.1 catalase HPII -
  Q5709_RS13870 (Q5709_13875) - 2916056..2916703 (+) 648 WP_005024126.1 hypothetical protein -
  Q5709_RS13875 (Q5709_13880) - 2916980..2917306 (+) 327 WP_005024124.1 hypothetical protein -
  Q5709_RS13880 (Q5709_13885) - 2917382..2918248 (+) 867 WP_005024122.1 SDR family oxidoreductase -
  Q5709_RS13885 (Q5709_13890) ssb 2918394..2918978 (-) 585 WP_005024120.1 single-stranded DNA-binding protein Machinery gene
  Q5709_RS13890 (Q5709_13895) - 2919030..2920394 (-) 1365 WP_005024118.1 MFS transporter -
  Q5709_RS13895 (Q5709_13900) - 2920543..2921625 (-) 1083 WP_005024117.1 DUF475 domain-containing protein -
  Q5709_RS13900 (Q5709_13905) tenA 2921866..2922540 (+) 675 WP_005017903.1 thiaminase II -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21070.77 Da        Isoelectric Point: 6.4820

>NTDB_id=862657 Q5709_RS13885 WP_005024120.1 2918394..2918978(-) (ssb) [Acinetobacter radioresistens strain MC-14]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSGRQQGDQAGAGFGGDQGYGQPRFNNNQGSQGGYGNGNQQGGGFNNNNNQG
GGYGNNNPGGFAPKAPQSAPASQVPADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=862657 Q5709_RS13885 WP_005024120.1 2918394..2918978(-) (ssb) [Acinetobacter radioresistens strain MC-14]
ATGCGTGGTGTAAATAAGGTTATTTTAGTAGGGACTTTAGGGCGCGATCCAGAGACAAAAACTTTCCCAAATGGCGGCTC
TTTAACACAGTTTTCTATCGCAACGAGTGAATCGTGGACAGATAAAAGCACAGGTGAACGTAAAGAACAGACAGAATGGC
ACCGTATTGTGCTACACAACCGTCTAGGTGAAATTGCCCAGCAATATTTACGTAAAGGTTCAAAAGTTTATATTGAAGGT
TCATTGCGTACCCGTCAATGGACCGACCAGAACGGTCAGGAACGTTATACTACCGAGATTCGTGGTGAACAGATGCAGAT
GCTAGACTCAGGCCGACAGCAGGGCGATCAGGCAGGTGCAGGTTTTGGTGGTGATCAAGGCTATGGTCAACCACGTTTCA
ATAATAATCAGGGTAGCCAGGGCGGTTATGGTAATGGCAACCAGCAGGGTGGCGGTTTTAATAATAACAACAACCAAGGT
GGCGGTTATGGCAATAATAACCCGGGCGGTTTCGCACCTAAAGCTCCTCAGTCAGCTCCAGCCTCTCAAGTTCCGGCTGA
CCTGGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

54.271

100

0.557
  ssb Vibrio cholerae strain A1552

42.647

100

0.448
  ssb Neisseria gonorrhoeae MS11

41

100

0.423
  ssb Neisseria meningitidis MC58

40.5

100

0.418