Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q4617_RS01060 Genome accession   NZ_CP131470
Coordinates   232877..233461 (+) Length   194 a.a.
NCBI ID   WP_112986112.1    Uniprot ID   A0A365PMU6
Organism   Acinetobacter junii strain SC22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 227877..238461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4617_RS01040 (Q4617_01040) - 228885..229241 (+) 357 WP_005403381.1 DUF1304 domain-containing protein -
  Q4617_RS01045 (Q4617_01045) tenA 229392..230066 (-) 675 WP_004951380.1 thiaminase II -
  Q4617_RS01050 (Q4617_01050) - 230241..231323 (+) 1083 WP_112986111.1 DUF475 domain-containing protein -
  Q4617_RS01055 (Q4617_01055) - 231460..232824 (+) 1365 WP_005403380.1 MFS transporter -
  Q4617_RS01060 (Q4617_01060) ssb 232877..233461 (+) 585 WP_112986112.1 single-stranded DNA-binding protein Machinery gene
  Q4617_RS01065 (Q4617_01065) - 233968..235410 (+) 1443 WP_112986113.1 amino acid permease -
  Q4617_RS01070 (Q4617_01070) - 235483..236982 (-) 1500 WP_112986114.1 PLP-dependent aminotransferase family protein -
  Q4617_RS01075 (Q4617_01075) gabT 237137..238429 (+) 1293 WP_004964859.1 4-aminobutyrate--2-oxoglutarate transaminase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21271.99 Da        Isoelectric Point: 6.7308

>NTDB_id=862538 Q4617_RS01060 WP_112986112.1 232877..233461(+) (ssb) [Acinetobacter junii strain SC22]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDSRQQGGEHQAGNDFNQPRFNNNQGGGYQNTGYNNNQNGYGQGGGFGGGNQG
NYAGSPQAGNGFNTPKATPQPAAAPADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=862538 Q4617_RS01060 WP_112986112.1 232877..233461(+) (ssb) [Acinetobacter junii strain SC22]
ATGCGTGGTGTGAATAAAGTTATTTTAGTCGGTACTTTGGGTAAAGATCCTGAGACAAAAACCTTTCCAAATGGTGGATC
ACTGACCCAATTTTCGATTGCAACAAGTGAATCGTGGACAGATAAAAATACAGGCGAACGAAAAGAACAAACAGAATGGC
ATCGTATCGTATTGCATAACCGTTTAGGTGAAATTGCACAGCAATACTTACGTAAAGGTTCGAAAGTTTATATCGAAGGT
TCATTGCGTACACGCCAATGGACAGACCAAAATGGTCAAGAGCGTTACAGCACCGAAATTCGTGGTGACCAAATGCAAAT
GCTCGATTCTCGTCAGCAAGGTGGTGAGCATCAAGCGGGTAATGATTTTAACCAACCGCGTTTTAACAATAATCAAGGCG
GTGGCTACCAAAACACAGGCTATAACAACAACCAAAATGGTTATGGTCAAGGTGGCGGTTTTGGTGGTGGAAATCAGGGC
AATTATGCAGGCAGTCCGCAAGCAGGTAATGGTTTTAATACACCAAAAGCCACACCTCAACCTGCTGCGGCTCCAGCTGA
CTTAGATGATGATTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A365PMU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.739

100

0.531
  ssb Vibrio cholerae strain A1552

44.67

100

0.454
  ssb Neisseria meningitidis MC58

39.583

98.969

0.392
  ssb Neisseria gonorrhoeae MS11

39.583

98.969

0.392