Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   Q7260_RS07790 Genome accession   NZ_CP131440
Coordinates   1483058..1484470 (-) Length   470 a.a.
NCBI ID   WP_002855316.1    Uniprot ID   -
Organism   Campylobacter jejuni strain S36     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1478058..1489470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7260_RS07765 (Q7260_07765) - 1478382..1479146 (+) 765 WP_002855821.1 TSUP family transporter -
  Q7260_RS07770 (Q7260_07770) ctsF 1479139..1480320 (-) 1182 WP_057033637.1 type II secretion system F family protein Machinery gene
  Q7260_RS07775 (Q7260_07775) ctsE 1480317..1481876 (-) 1560 WP_032586875.1 GspE/PulE family protein Machinery gene
  Q7260_RS07780 (Q7260_07780) ctsX 1481866..1482453 (-) 588 WP_032584555.1 transformation system protein Machinery gene
  Q7260_RS07785 (Q7260_07785) ctsP 1482457..1483065 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  Q7260_RS07790 (Q7260_07790) ctsD 1483058..1484470 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  Q7260_RS07795 (Q7260_07795) ctsR 1484448..1484759 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  Q7260_RS07800 (Q7260_07800) nifJ 1484783..1488343 (-) 3561 WP_057033678.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  Q7260_RS07805 (Q7260_07805) - 1488436..1489078 (-) 643 Protein_1518 HAD family hydrolase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 53106.71 Da        Isoelectric Point: 6.6184

>NTDB_id=862412 Q7260_RS07790 WP_002855316.1 1483058..1484470(-) (ctsD) [Campylobacter jejuni strain S36]
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLEILQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKIPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=862412 Q7260_RS07790 WP_002855316.1 1483058..1484470(-) (ctsD) [Campylobacter jejuni strain S36]
ATGATAAGATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAATGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTTAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAATATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTAGACGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGACGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAATTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAACCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCGCAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGTGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAA
GGCACTGAAAATGGGACTACTGTTAGTGAAAGTTATAATAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTTAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGTGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATCGTTTTTATTATCACTCCAAGTATAGTAG
ATAGCGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(281-454)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

99.787

100

0.998